Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene155854 SustainPine v3.0 530
AutoFact: DUF1777 multi-domain protein 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
C-terminus
sp_v3.0_unigene156598 SustainPine v3.0 358
AutoFact: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Oikopleura dioica RepID=E4YT26_OIKDI 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene156875 SustainPine v3.0 424
AutoFact: PREDICTED: similar to U1 small nuclear ribonucleoprotein A [Tribolium castaneum] gb|EFA00191.1| hypothetical protein TcasGA2_TC003016 [Tribolium castaneum] 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Spliceosomal protein 5.028e-09
C-terminus
sp_v3.0_unigene156881 SustainPine v3.0 331
AutoFact: TIDP3207; LOC100285059; K12872 pre-mRNA-splicing factor RBM22/SLT11 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RRM-containing RNA-binding protein-like protein 6.985e-09
Putative N-terminus
sp_v3.0_unigene156967 SustainPine v3.0 339
AutoFact: Polyadenylate-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIF4_RICCO 4.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-binding protein 8A 1.186e-07
Internal
sp_v3.0_unigene157076 SustainPine v3.0 274
AutoFact: Polyadenylate-binding protein n=6 Tax=Ajellomyces RepID=C0NSS5_AJECG 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyadenlyte binding protein 6.335e-06
C-terminus
sp_v3.0_unigene157210 SustainPine v3.0 310
AutoFact: RNA-binding region RNP-1 domain-containing protein n=1 Tax=Polysphondylium pallidum RepID=D3AVQ3_POLPA 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyadenlyte binding protein 6.335e-06
C-terminus
sp_v3.0_unigene157542 SustainPine v3.0 368
AutoFact: Transcriptional coactivator CAPER (RRM superfamily) (ISS) [Ostreococcus tauri] emb|CAL51913.1| Transcriptional coactivator CAPER (RRM superfamily) (ISS) [Ostreococcus tauri] 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene158193 SustainPine v3.0 456
AutoFact: polypyrimidine tract binding protein-like [Danio rerio] 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene158226 SustainPine v3.0 256
AutoFact: pre-mRNA branch site protein p14 [Arabidopsis thaliana] ref|XP_002873554.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] sp|Q9FMP4.1|PM14_ARATH RecName: Full=Pre-mRNA branch site p14-like protein dbj|BAB10037.1| unnamed prot 7.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
C-terminus
sp_v3.0_unigene158538 SustainPine v3.0 492
AutoFact: PremRNAsplicing factor 38B putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WLM7_9STRA 2.0e-14
FL-Next: tr=PremRNAsplicing factor 38B putative; Albugo laibachii Nc14. 0.0
Internal
sp_v3.0_unigene158584 SustainPine v3.0 509
AutoFact: Ribosomal protein S2 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9C019_9EUKA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S2 2.512e-19
N-terminus
sp_v3.0_unigene158964 SustainPine v3.0 365
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.0e-12
FL-Next: tr=Putative uncharacterized protein; Ectocarpus siliculosus (Brown alga). 0.0
Putative C-terminus
sp_v3.0_unigene159102 SustainPine v3.0 265
AutoFact: glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40] ref|XP_002376652.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus flavus NRRL3357] dbj|BAE58923.1| unnamed protein product [Aspergillus oryzae RIB40] gb|EED53406.1| heterogen 1.0e-21
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 7.776e-30
N-terminus
sp_v3.0_unigene159237 SustainPine v3.0 335
AutoFact: ribosomal biogenesis protein Gar2 [Neosartorya fischeri NRRL 181] gb|EAW25486.1| ribosomal biogenesis protein Gar2 [Neosartorya fischeri NRRL 181] 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene160578 SustainPine v3.0 485
AutoFact: putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group] gb|EAZ14353.1| hypothetical p 3.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-binding region-containing protein, putative 1.231e-19
Putative N-terminus
sp_v3.0_unigene160859 SustainPine v3.0 458
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene161285 SustainPine v3.0 357
AutoFact: receptor-like protein kinase THESEUS 1 [Arabidopsis thaliana] sp|Q9LK35.1|THE1_ARATH RecName: Full=Receptor-like protein kinase THESEUS 1; Flags: Precursor dbj|BAA98098.1| receptor-protein kinase-like protein [Arabidopsis thaliana] gb|AED96490.1| receptor 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: FERONIA receptor-like kinase 5.431e-18
Internal
sp_v3.0_unigene161415 SustainPine v3.0 365
AutoFact: Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] dbj|BAB09816.1| unnamed protein product [Arabidopsis thaliana] gb|AED91069.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] 1.0e-19
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene161642 SustainPine v3.0 263
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain