Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene152234 SustainPine v3.0 362
• AutoFact: putative Glycine-rich protein 2 [Oryza sativa Japonica Group] dbj|BAD07599.1| putative Glycine-rich protein 2 [Oryza sativa Japonica Group] gb|EAZ21537.1| hypothetical protein OsJ_05164 [Oryza sativa Japonica Group] gb|ACD13288.1| cold shock domain protei 1.0e-17
• FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Cold-shock protein with RNA binding domain 4.714e-08
Putative N-terminus
sp_v3.0_unigene152491 SustainPine v3.0 392
• AutoFact: PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 2 isoform 13 n=1 Tax=Canis lupus familiaris RepID=UPI00005A2D0C 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene152622 SustainPine v3.0 431
• AutoFact: Polyadenylate-binding protein 1-B n=2 Tax=Phytophthora infestans T30-4 RepID=D0MV08_PHYIT 9.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Poly(A)-binding protein 1.972e-13
Putative C-terminus
sp_v3.0_unigene152637 SustainPine v3.0 506
• AutoFact: glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40] dbj|BAE56344.1| unnamed protein product [Aspergillus oryzae RIB40] 2.0e-17
• FL-Next: tr=Glycine-rich RNA-binding protein; Sequoia sempervirens (California redwood) (Taxodium sempervirens). 0.0
• Sma3: Glycine-rich RNA-binding protein 1.586e-36
N-terminus
sp_v3.0_unigene152768 SustainPine v3.0 445
• AutoFact: Pre-mRNA branch site protein p14 n=3 Tax=Culicidae RepID=B0WN88_CULQU 3.9937e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
Complete
sp_v3.0_unigene152834 SustainPine v3.0 389
• AutoFact: RNA-binding region RNP-1 domain-containing protein n=1 Tax=Dictyostelium discoideum RepID=Q1ZXB1_DICDI 7.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene153337 SustainPine v3.0 230
• AutoFact: RNP-1 like RNA-binding protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PG91_CHIPD 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene153552 SustainPine v3.0 475
• AutoFact: Pre-mRNA branch site protein p14 n=23 Tax=Euteleostomi RepID=PM14_HUMAN 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
Complete
sp_v3.0_unigene153613 SustainPine v3.0 375
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 8.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative splicing factor 3.93e-07
C-terminus
sp_v3.0_unigene154148 SustainPine v3.0 364
• AutoFact: RNA binding protein, putative n=1 Tax=Plasmodium vivax SaI-1 RepID=A5K789_PLAVS 3.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene154304 SustainPine v3.0 113
• AutoFact: U1 small nuclear ribonucleoprotein A, putative n=1 Tax=Ixodes scapularis RepID=B7PQ08_IXOSC 5.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene154396 SustainPine v3.0 338
• AutoFact: Polyadenylate-binding protein 2 n=1 Tax=Schizosaccharomyces pombe 972h- RepID=PAB2_SCHPO 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyadenylate-binding protein 2 1.017e-14
C-terminus
sp_v3.0_unigene154723 SustainPine v3.0 365
• AutoFact: U2 small nuclear RNA auxiliary factor 1 (Fragment) n=1 Tax=Microcosmus squamiger RepID=E3PQY0_9ASCI 9.99967e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 1.517e-11
Internal
sp_v3.0_unigene155079 SustainPine v3.0 321
• AutoFact: MRD1-like protein n=3 Tax=Metarhizium RepID=E9EMI6_METAR 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene155229 SustainPine v3.0 507
• AutoFact: Cyclophilin, putative n=4 Tax=Plasmodium RepID=A5K4H5_PLAVS 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene155440 SustainPine v3.0 485
• AutoFact: putative U1 small nuclear ribonucleoprotein 70 kDa [Arabidopsis thaliana] 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative U1 small nuclear ribonucleoprotein 70 kDa 2.438e-09
Putative Complete
sp_v3.0_unigene155530 SustainPine v3.0 504
• AutoFact: RNA-binding glycine rich protein [Nicotiana sylvestris] gb|ADG03639.1| RNA-binding glycine-rich protein [Nicotiana tabacum] 1.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 7 2.683e-10
Putative C-terminus
sp_v3.0_unigene155686 SustainPine v3.0 439
• AutoFact: splicing factor 3b, subunit 4, 49kDa [Xenopus laevis] gb|AAH45264.1| Spx-prov protein [Xenopus laevis] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative spliceosome associated protein 1.318e-08
Internal
sp_v3.0_unigene155701 SustainPine v3.0 390
• AutoFact: Endonuclease III homolog n=1 Tax=Schizosaccharomyces pombe 972h- RepID=NTH1_SCHPO 1.0e-36
• FL-Next: tr=Predicted protein; Ostreococcus lucimarinus (strain CCE9901). 0.0
Internal
sp_v3.0_unigene155756 SustainPine v3.0 425
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain