Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene148281 SustainPine v3.0 331
AutoFact: putative RNA binding protein [Oryza sativa Japonica Group] gb|ABF97192.1| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] dbj|BAG95141.1| unnamed protein product [Oryza sativa Japonica Group] 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear acid binding protein, putative 3.226e-15
C-terminus
sp_v3.0_unigene148529 SustainPine v3.0 248
AutoFact: RNA-directed RNA Polymerase (Fragment) n=1 Tax=Vigna unguiculata RepID=Q75ZN6_VIGUN 3.0e-16
FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene148675 SustainPine v3.0 307
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene148884 SustainPine v3.0 231
AutoFact: Unassigned protein 7.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene148922 SustainPine v3.0 273
AutoFact: Copine family protein n=2 Tax=Zea mays RepID=B6TK33_MAIZE 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copine, putative 8.743e-21
Internal
sp_v3.0_unigene149296 SustainPine v3.0 190
AutoFact: RNA-dependent RNA polymerase 6 n=6 Tax=Nicotiana RepID=A9CRC9_TOBAC 3.0e-14
FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Rna-dependent RNA polymerase 3.009e-08
Internal
sp_v3.0_unigene149409 SustainPine v3.0 198
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene149453 SustainPine v3.0 211
AutoFact: Unassigned protein 8.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene149627 SustainPine v3.0 267
AutoFact: DNA-damage repair protein drt111, putative n=1 Tax=Ricinus communis RepID=B9SB37_RICCO 2.0e-06
FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Splicing factor 45 2.9e-09
C-terminus
sp_v3.0_unigene149759 SustainPine v3.0 397
AutoFact: [RTKL] COG0515 Serine/threonine protein kinase 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 1.772e-12
Internal
sp_v3.0_unigene150029 SustainPine v3.0 245
AutoFact: Unassigned protein
FL-Next: tr=Squamous cell carcinoma antigen recognized by T-cells, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene150790 SustainPine v3.0 469
AutoFact: Polyadenlyte binding protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CFU7_THAPS 4.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyadenlyte binding protein 7.31e-06
Putative C-terminus
sp_v3.0_unigene150867 SustainPine v3.0 323
AutoFact: Very similar to receptor-like serine/threonine kinase [Arabidopsis thaliana] 8.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 1.327e-12
Internal
sp_v3.0_unigene151063 SustainPine v3.0 317
AutoFact: PREDICTED: nuclear cap-binding protein subunit 2-like n=1 Tax=Meleagris gallopavo RepID=UPI0002035C1F 1.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear cap-binding protein 3.771e-11
Internal
sp_v3.0_unigene151081 SustainPine v3.0 432
AutoFact: Cleavage stimulation factor subunit 2 (Fragment) n=1 Tax=Angiostrongylus cantonensis RepID=F5GTJ9_9BILA 8.0e-30
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
N-terminus
sp_v3.0_unigene151627 SustainPine v3.0 166
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Arthrodermataceae RepID=F2S5E4_TRITO 5.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene151677 SustainPine v3.0 352
AutoFact: RNA-binding protein with serine-rich domain 1 n=20 Tax=Amniota RepID=RNPS1_HUMAN 3.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative arginine/serine-rich protein-like 2.924e-06
Internal
sp_v3.0_unigene151957 SustainPine v3.0 359
AutoFact: Protein MEI2-like 1 n=2 Tax=Arabidopsis RepID=AML1_ARATH 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AML1 9.593e-09
C-terminus
sp_v3.0_unigene152014 SustainPine v3.0 549
AutoFact: DNAdirected RNA polymerase II 19 kDa polypeptide pu n=2 Tax=Oomycetes RepID=F0WFZ2_9STRA 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: RNA polymerase II subunit B7 1.86e-09
C-terminus
sp_v3.0_unigene152091 SustainPine v3.0 447
AutoFact: RNA recognition motif, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KKB9_9ALVE 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain