Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene144371 SustainPine v3.0 546
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene144446 SustainPine v3.0 251
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene144474 SustainPine v3.0 343
AutoFact: plastidic phosphate translocator-like protein1 [Mesembryanthemum crystallinum] 4.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Plastidic phosphate translocator-like protein1 8.794e-11
Internal
sp_v3.0_unigene144498 SustainPine v3.0 1641
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein At2g44720 1.696e-09
Putative Complete
sp_v3.0_unigene144743 SustainPine v3.0 297
AutoFact: Unassigned protein 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene144991 SustainPine v3.0 544
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAB09540.1| unnamed protein product [Arabidopsis thaliana] gb|AED96394.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 1.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene145016 SustainPine v3.0 337
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene145158 SustainPine v3.0 413
coding
sp_v3.0_unigene145178 SustainPine v3.0 490
AutoFact: DUF1421 domain containing protein 2.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene145352 SustainPine v3.0 502
AutoFact: Unassigned protein 3.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene145395 SustainPine v3.0 351
AutoFact: Unassigned protein 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene145496 SustainPine v3.0 150
AutoFact: Unassigned protein 5.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene145990 SustainPine v3.0 1207
AutoFact: pfam01762, Galactosyl_T, Galactosyltransferase 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Beta-1,3-galactosyltransferase sqv-2, putative 1.5e-23
Putative N-terminus
sp_v3.0_unigene146172 SustainPine v3.0 302
AutoFact: putative beta-1,3-galactosyltransferase 6 [Arabidopsis thaliana] sp|Q9MAP8.1|B3GT6_ARATH RecName: Full=Probable beta-1,3-galactosyltransferase 6 gb|AAF31275.1|AC006424_4 Highly similar to avr9 [Arabidopsis thaliana] gb|AAP21243.1| At1g32930 [Arabidopsis t 1.96182e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Beta-1,3-galactosyltransferase sqv-2, putative 2.271e-16
Internal
sp_v3.0_unigene146180 SustainPine v3.0 1024
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 1.0e-36
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene146440 SustainPine v3.0 438
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 6.0e-30
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 0.0
Putative N-terminus
sp_v3.0_unigene146446 SustainPine v3.0 179
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 8.0e-07
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Internal
sp_v3.0_unigene146971 SustainPine v3.0 601
AutoFact: FAP multi-domain protein 8.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AT3G15010 protein 6.335e-06
C-terminus
sp_v3.0_unigene146985 SustainPine v3.0 765
AutoFact: Drf_FH1 multi-domain protein 5.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene147216 SustainPine v3.0 696
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 7.00005e-41
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain