Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene141023 SustainPine v3.0 312
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene141193 SustainPine v3.0 256
AutoFact: Os01g0367300 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5JJM4_ORYSJ 7.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene141268 SustainPine v3.0 548
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AED97256.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 6.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: THO complex subunit 4 2.235e-12
Putative N-terminus
sp_v3.0_unigene141290 SustainPine v3.0 255
AutoFact: Unassigned protein 4.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene141293 SustainPine v3.0 430
AutoFact: Unassigned protein 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene141347 SustainPine v3.0 282
AutoFact: Jun domain containing protein 3.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene141376 SustainPine v3.0 301
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAL32774.1| Unknown protein [Arabidopsis thaliana] gb|AAM13377.1| unknown protein [Arabidopsis thaliana] gb|AEE75314.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 1.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene141389 SustainPine v3.0 157
AutoFact: Bidirectional amino acid transporter 1 n=4 Tax=Arabidopsis RepID=Q9ZU50_ARATH 1.0e-13
FL-Next: sp=Amino-acid permease BAT1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative GABA-specific permease 3.485e-16
Internal
sp_v3.0_unigene141401 SustainPine v3.0 321
AutoFact: Unassigned protein 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene141488 SustainPine v3.0 493
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein, putative, expressed 1.902e-09
Putative N-terminus
sp_v3.0_unigene141639 SustainPine v3.0 315
unknown
sp_v3.0_unigene141737 SustainPine v3.0 481
AutoFact: putative RNA-binding like protein [Oryza sativa Japonica Group] 4.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 5-enolpyruvylshikimate-3-phosphate synthase 8.409e-30
Putative C-terminus
sp_v3.0_unigene141739 SustainPine v3.0 143
AutoFact: protein kinase-like protein [Arabidopsis thaliana] gb|AAG51561.1|AC027034_7 protein kinase, putative; 86372-89112 [Arabidopsis thaliana] gb|AAL36319.1| putative protein kinase [Arabidopsis thaliana] gb|AAM20044.1| putative protein kinase [Arabidopsis thal 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 4.938e-19
Internal
sp_v3.0_unigene142008 SustainPine v3.0 359
AutoFact: Probable fibrillarin (Fragment) n=2 Tax=Picea RepID=O65058_PICMA 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Fibrillarin, putative 6.336e-08
Putative N-terminus
sp_v3.0_unigene142026 SustainPine v3.0 876
AutoFact: RNA-binding protein, putative [Musa acuminata] 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 1.007e-15
Putative C-terminus
sp_v3.0_unigene142284 SustainPine v3.0 469
AutoFact: U1 snRNP-interacting 70 kDa protein [Triticum aestivum] 7.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene142332 SustainPine v3.0 1111
AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] gb|AED93710.1| translation initiation factor 3 subunit B [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: eIF3b 1.134e-08
Putative C-terminus
sp_v3.0_unigene142381 SustainPine v3.0 720
AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9R9G7_RICCO 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene142548 SustainPine v3.0 556
AutoFact: Beta-1,3-galactosyltransferase sqv-2, putative n=1 Tax=Ricinus communis RepID=B9RYW6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Beta-1,3-galactosyltransferase sqv-2, putative 1.531e-23
Putative C-terminus
sp_v3.0_unigene142560 SustainPine v3.0 423
AutoFact: PRP38_assoc multi-domain protein 4.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain