Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene24324 SustainPine v3.0 412
• AutoFact: Drf_FH1 multi-domain protein 3.0e-15
• Sma3: Glycine-rich protein 5.733e-12
coding
sp_v3.0_unigene24422 SustainPine v3.0 1490
• AutoFact: Os03g0374575 protein n=4 Tax=Oryza sativa RepID=C7J0R1_ORYSJ 4.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Serine/arginine rich splicing factor, putative 1.058e-15
Complete
sp_v3.0_unigene24426 SustainPine v3.0 2343
• AutoFact: pfam01762, Galactosyl_T, Galactosyltransferase 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-1,3-galactosyltransferase sqv-2, putative 6.703e-23
Complete
sp_v3.0_unigene24445 SustainPine v3.0 487
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heterogeneous nuclear ribonucleoprotein, putative 1.616e-09
Putative N-terminus
sp_v3.0_unigene24482 SustainPine v3.0 541
• AutoFact: putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia] 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Splicing factor, arginine/serine-rich 2 5.614e-16
N-terminus
sp_v3.0_unigene24751 SustainPine v3.0 577
• AutoFact: RNA-binding motif protein, X-linked 2 [Arabidopsis thaliana] sp|Q9SD61.1|C3H42_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 42; Short=AtC3H42 emb|CAB61958.1| putative RNA binding protein [Arabidopsis thaliana] gb|AAO00832.1| putative RNA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene24764 SustainPine v3.0 314
• AutoFact: embryonic polyadenylate-binding protein [Xenopus (Silurana) tropicalis] sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein; Short=Embryonic poly(A)-binding protein; Short=ePABP gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) 8.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Poly(A)-binding protein 6.918e-24
C-terminus
sp_v3.0_unigene24772 SustainPine v3.0 3287
• AutoFact: nucleic acid binding protein [Arabidopsis thaliana] ref|NP_001118640.1| nucleic acid binding protein [Arabidopsis thaliana] gb|ABF59160.1| hypothetical protein At3g15605 [Arabidopsis thaliana] gb|AEE75698.1| nucleic acid binding protein [Arabidopsis thali 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene24777 SustainPine v3.0 3974
• AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE83159.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene24891 SustainPine v3.0 423
• AutoFact: Putative glycine-rich RNA-binding protein 2 n=1 Tax=Bambusa oldhamii RepID=B5KLZ7_BAMOL 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 7.67e-26
N-terminus
sp_v3.0_unigene25262 SustainPine v3.0 683
• AutoFact: Pentatricopeptide repeat-containing protein, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9RPX5_RICCO 1.00053e-42
• FL-Next: sp=Pentatricopeptide repeat-containing protein At5g04810, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene25406 SustainPine v3.0 725
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene25442 SustainPine v3.0 841
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 1.99993e-41
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene25491 SustainPine v3.0 2157
• AutoFact: LUC7 related protein [Arabidopsis thaliana] gb|AAK96571.1| AT5g17440/K3M16_10 [Arabidopsis thaliana] gb|AAL36075.1| AT5g17440/K3M16_10 [Arabidopsis thaliana] gb|AED92426.1| LUC7 related protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene25662 SustainPine v3.0 420
• AutoFact: U11/U12 small nuclear ribonucleoprotein 35 kDa protein n=1 Tax=Xenopus laevis RepID=U1SBP_XENLA 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative U1 small nuclear ribonucleoprotein 70 kDa 1.964e-09
Putative Complete
sp_v3.0_unigene26774 SustainPine v3.0 1925
• AutoFact: [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Poly(A) polymerase, putative 3.223e-08
Complete
sp_v3.0_unigene26885 SustainPine v3.0 769
• AutoFact: Unassigned protein 3.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene26913 SustainPine v3.0 559
• AutoFact: glycine-rich RNA-binding protein 4 [Arabidopsis thaliana] ref|NP_850629.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana] dbj|BAB03001.1| glycine-rich RNA binding protein-like [Arabidopsis thaliana] gb|AAL50093.1| AT3g23830/F14O13_2 [Arabidopsi 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein, putative 7.666e-07
Complete
sp_v3.0_unigene27035 SustainPine v3.0 1470
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative splicing regulatory protein 8.154e-12
Complete
sp_v3.0_unigene27195 SustainPine v3.0 467
• AutoFact: Cleavage stimulation factor subunit 2 n=2 Tax=Ascaris suum RepID=F1LGI5_ASCSU 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain