Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene17898 SustainPine v3.0 1261
• AutoFact: RNA-binding protein [Medicago truncatula] 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene17925 SustainPine v3.0 1488
• AutoFact: splicing factor [Oryza sativa Indica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene17984 SustainPine v3.0 1189
• AutoFact: LUC7 related protein [Arabidopsis thaliana] gb|AAK96571.1| AT5g17440/K3M16_10 [Arabidopsis thaliana] gb|AAL36075.1| AT5g17440/K3M16_10 [Arabidopsis thaliana] gb|AED92426.1| LUC7 related protein [Arabidopsis thaliana] 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene18016 SustainPine v3.0 1332
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAH20130.1| AT5G46840 [Arabidopsis thaliana] gb|AED95433.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene18038 SustainPine v3.0 1424
• AutoFact: Unassigned protein
• FL-Next: sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum (Blue gem) (Torenia plantagineum). 0.0
• Sma3: Desiccation-related protein PCC13-62, putative 4.142e-14
Complete
sp_v3.0_unigene18133 SustainPine v3.0 2070
• AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene18189 SustainPine v3.0 572
• AutoFact: putative RNA-binding protein [Arabidopsis thaliana] 9.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 1.259e-15
N-terminus
sp_v3.0_unigene18207 SustainPine v3.0 1818
• AutoFact: RNA-binding protein [Medicago truncatula] 5.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene18232 SustainPine v3.0 2153
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAL67015.1| putative DNA binding protein ACBF [Arabidopsis thaliana] gb|AAM45052.1| putative DNA binding protein ACBF [Arabidopsis thaliana] gb|AED92689.1| RNA recognition motif-containing 0.0
• FL-Next: sp=Polyadenylate-binding protein RBP47B'; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Nuclear acid binding protein, putative 1.15e-22
Complete
sp_v3.0_unigene18270 SustainPine v3.0 1656
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA binding protein, putative 8.584e-06
Complete
sp_v3.0_unigene18281 SustainPine v3.0 1183
• AutoFact: protein RHOMBOID-like 1 [Arabidopsis thaliana] dbj|BAF00472.1| hypothetical protein [Arabidopsis thaliana] gb|AEC08202.1| protein RHOMBOID-like 1 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Membrane protein 6.884e-20
C-terminus
sp_v3.0_unigene18326 SustainPine v3.0 2630
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 6.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene18488 SustainPine v3.0 1461
• AutoFact: protein serine/arginine-rich 22 [Arabidopsis thaliana] ref|NP_001078474.1| protein serine/arginine-rich 22 [Arabidopsis thaliana] emb|CAA19765.1| RSZp22 splicing factor [Arabidopsis thaliana] gb|AAD12769.1| 9G8-like SR protein [Arabidopsis thaliana] emb|C 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor, putative 0.0
Complete
sp_v3.0_unigene18610 SustainPine v3.0 660
• AutoFact: RNA-binding protein [Medicago truncatula] 3.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene18647 SustainPine v3.0 2029
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene18681 SustainPine v3.0 785
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene18690 SustainPine v3.0 1927
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAC42069.1| unknown protein [Arabidopsis thaliana] gb|AEE75401.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene18726 SustainPine v3.0 1007
• AutoFact: Tymo_45kd_70kd multi-domain protein 1.0e-10
• Sma3: Putative arginine/serine-rich protein 3.506e-09
coding
sp_v3.0_unigene18761 SustainPine v3.0 1303
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_61.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7SNG6_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene18787 SustainPine v3.0 1002
• AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM40_MARPO 0.0
• FL-Next: tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
• Sma3: Leucine-rich repeat receptor-like protein kinase 5.667e-19
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain