Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene15724 SustainPine v3.0 403
AutoFact: RNA recognition motif (ISS) [Ostreococcus tauri] emb|CAL51584.1| RNA recognition motif (ISS) [Ostreococcus tauri] 8.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene15764 SustainPine v3.0 1196
AutoFact: SHR5-receptor-like kinase [Saccharum hybrid cultivar SP70-1143] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr10 scaffold_81, whole genome shotgun sequence 5.483e-13
Putative C-terminus
sp_v3.0_unigene15793 SustainPine v3.0 2010
AutoFact: alternative splicing regulator [Triticum aestivum] 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene15836 SustainPine v3.0 801
AutoFact: RecName: Full=Metal transporter Nramp3; Short=OsNramp3 dbj|BAD45911.1| putative NRAMP metal ion transporter 1 [Oryza sativa Japonica Group] gb|EAZ02068.1| hypothetical protein OsI_24146 [Oryza sativa Indica Group] gb|EAZ38005.1| hypothetical protein OsJ_2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nramp transporter 8.768e-23
Putative N-terminus
sp_v3.0_unigene16115 SustainPine v3.0 659
AutoFact: Ubiquitin system component Cue protein n=1 Tax=Arabidopsis thaliana RepID=B3H6L4_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene16151 SustainPine v3.0 455
AutoFact: Nop14 multi-domain protein 5.0e-05
coding
sp_v3.0_unigene16433 SustainPine v3.0 1400
AutoFact: Unassigned protein
FL-Next: sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum (Blue gem) (Torenia plantagineum). 0.0
Sma3: Desiccation-related protein PCC13-62, putative 4.502e-14
Complete
sp_v3.0_unigene16439 SustainPine v3.0 1486
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene16483 SustainPine v3.0 2093
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAB03120.1| unnamed protein product [Arabidopsis thaliana] gb|AAL85976.1| unknown protein [Arabidopsis thaliana] gb|AAM67536.1| unknown protein [Arabidopsis thaliana] dbj|BAD94504.1| hypo 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein At3g13224 1.052e-08
Complete
sp_v3.0_unigene16680 SustainPine v3.0 598
AutoFact: Cell division protease ftsH, putative n=1 Tax=Ricinus communis RepID=B9SIY9_RICCO 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Membrane AAA-metalloprotease 5.882e-09
Internal
sp_v3.0_unigene16687 SustainPine v3.0 221
AutoFact: putative stage III sporulation protein AA [Arabidopsis thaliana] dbj|BAF00902.1| hypothetical protein [Arabidopsis thaliana] gb|AEE31582.1| putative stage III sporulation protein AA [Arabidopsis thaliana] 1.0e-26
FL-Next: sp=Uncharacterized protein ycf45; Porphyra purpurea. Plastid; Chloroplast. 0.0
Sma3: Stage III sporulation protein AA, putative 2.673e-08
Internal
sp_v3.0_unigene16714 SustainPine v3.0 806
AutoFact: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Arabidopsis thaliana] sp|Q67ZE1.2|HSDD2_ARATH RecName: Full=3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; Short=At3BETAHSD/D2; AltName: Full=4alpha-carboxysterol-C3-dehydrogenase/C4 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 3-beta-hydroxysteroid dehydrogenase 7.95e-12
Internal
sp_v3.0_unigene16776 SustainPine v3.0 402
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene16814 SustainPine v3.0 981
AutoFact: SHR5-receptor-like kinase [Saccharum hybrid cultivar SP70-1143] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr10 scaffold_81, whole genome shotgun sequence 1.028e-14
Putative C-terminus
sp_v3.0_unigene16820 SustainPine v3.0 1059
AutoFact: root-specific metal transporter [Malus baccata] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Metal transporter, putative 2.253e-12
Putative C-terminus
sp_v3.0_unigene16858 SustainPine v3.0 964
AutoFact: F27J15.13 n=2 Tax=Arabidopsis thaliana RepID=Q9M9B0_ARATH 6.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Leucine-rich repeat receptor-like protein kinase 1.021e-25
Putative C-terminus
sp_v3.0_unigene17030 SustainPine v3.0 2098
AutoFact: Heterogeneous nuclear ribonucleoprotein A3-like protein 2 n=3 Tax=Andropogoneae RepID=B6TV58_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene17076 SustainPine v3.0 1707
AutoFact: Strictosidine synthase, putative n=1 Tax=Ricinus communis RepID=B9RJ21_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative strictosidine synthase 1.019e-25
Complete
sp_v3.0_unigene17118 SustainPine v3.0 2103
AutoFact: RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula] 5.99756e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene17127 SustainPine v3.0 932
AutoFact: DUF1777 multi-domain protein 7.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain