Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene13534 SustainPine v3.0 471
• AutoFact: RNA-dependent RNA polymerase n=2 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI 3.9937e-43
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Rna-dependent RNA polymerase 1.429e-19
Internal
sp_v3.0_unigene13536 SustainPine v3.0 778
• AutoFact: DUF1777 multi-domain protein 7.0e-14
• Sma3: Arginine/serine-rich splicing factor 10 6.823e-06
coding
sp_v3.0_unigene13621 SustainPine v3.0 2662
• AutoFact: Phytochrome A-associated F-box protein, putative n=1 Tax=Ricinus communis RepID=B9SAQ8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene13727 SustainPine v3.0 1032
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAM20679.1| unknown protein [Arabidopsis thaliana] gb|AAM61131.1| unknown [Arabidopsis thaliana] gb|AAN72206.1| unknown protein [Arabidopsis thaliana] gb|AEE76442.1| RNA recognition motif- 2.0e-23
• FL-Next: sp=Glycine-rich RNA-binding protein 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene13828 SustainPine v3.0 660
• AutoFact: [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 2.0e-26
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Sma3: Poly(A) polymerase, putative 3.564e-08
Internal
sp_v3.0_unigene13868 SustainPine v3.0 1765
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAF63781.1| unknown protein [Arabidopsis thaliana] dbj|BAC42931.1| unknown protein [Arabidopsis thaliana] gb|AAO63991.1| putative RRM-containing protein [Arabidopsis thaliana] gb|AEE74089. 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene14086 SustainPine v3.0 654
• AutoFact: RNA-dependent RNA polymerase 6 n=1 Tax=Cucumis sativus RepID=E9NWL0_CUCSA 1.0e-34
• FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Rna-dependent RNA polymerase 9.007e-09
Internal
sp_v3.0_unigene14210 SustainPine v3.0 3522
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SP17_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene14279 SustainPine v3.0 1201
• AutoFact: Transformer multi-domain protein 0.0001
coding
sp_v3.0_unigene14310 SustainPine v3.0 943
• AutoFact: lectin protein kinase-like protein [Arabidopsis thaliana] sp|Q9XID3.1|Y1343_ARATH RecName: Full=G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300; Flags: Precursor gb|AAD39605.1|AC007454_4 Contains similarity to gi|479356 protein kin 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: S-receptor kinase, putative 2.341e-16
C-terminus
sp_v3.0_unigene14371 SustainPine v3.0 613
• AutoFact: Ubiquitin system component Cue protein [Arabidopsis thaliana] gb|AEE30873.1| Ubiquitin system component Cue protein [Arabidopsis thaliana] 1.0e-28
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene14448 SustainPine v3.0 529
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9R9V5_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene14612 SustainPine v3.0 475
• AutoFact: Receptor for egg jelly protein 9 n=1 Tax=Strongylocentrotus purpuratus RepID=A2TIR8_STRPU 4.0e-05
• Sma3: Putative snRNP protein 9.837e-09
coding
sp_v3.0_unigene14680 SustainPine v3.0 234
• AutoFact: FAP multi-domain protein 1.0e-10
• Sma3: Putative glycine-rich cell wall structural protein 1.383e-10
unknown
sp_v3.0_unigene14916 SustainPine v3.0 254
• AutoFact: Calmodulin binding protein n=1 Tax=Zea mays RepID=B6SPC3_MAIZE 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Calmodulin-binding protein 2.944e-07
Internal
sp_v3.0_unigene14991 SustainPine v3.0 342
• AutoFact: PAT1 domain containing protein 9.0e-05
unknown
sp_v3.0_unigene15187 SustainPine v3.0 1863
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative RNA-binding protein 2.882e-08
Complete
sp_v3.0_unigene15188 SustainPine v3.0 463
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNU3_RICCO 0.0
• FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene15410 SustainPine v3.0 644
• AutoFact: ATP-dependent peptidase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NFF7_COPC7 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division protease ftsH homolog 4, mitochondrial 5.902e-08
Internal
sp_v3.0_unigene15432 SustainPine v3.0 1756
• AutoFact: Copine, putative n=1 Tax=Ricinus communis RepID=B9RAR5_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copine, putative 1.213e-20
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain