Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene11524 SustainPine v3.0 1254
• AutoFact: transformer-SR ribonucleoprotein [Nicotiana tabacum] 5.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative transformer-SR ribonucleoprotein 2.884e-12
Complete
sp_v3.0_unigene11597 SustainPine v3.0 1888
• AutoFact: pollen-specific kinase partner protein [Solanum lycopersicum] 0.0
• FL-Next: sp=Rho guanine nucleotide exchange factor 8; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Rop guanine nucleotide exchange factor, putative 9.139e-23
Putative C-terminus
sp_v3.0_unigene11686 SustainPine v3.0 603
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAD31072.1|AC007357_21 Contains similarity to gb|Y12424 SGRP-1 protein frm Solanum commersonii and contains a PF|00076 RNA rocognition motif [Arabidopsis thaliana] gb|AAL32605.1| Unknown p 5.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene11718 SustainPine v3.0 2086
• AutoFact: Drf_FH1 multi-domain protein 2.0e-17
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Complete
sp_v3.0_unigene11776 SustainPine v3.0 1868
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAD94469.1| putative RNA-binding protein [Arabidopsis thaliana] dbj|BAF01884.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AEC10093.1| RNA recognition motif-containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene11807 SustainPine v3.0 1077
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 6.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene11860 SustainPine v3.0 1196
• AutoFact: putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa Japonica Group] dbj|BAD17631.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein At3g13224 3.622e-08
Putative N-terminus
sp_v3.0_unigene11897 SustainPine v3.0 2638
• AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene11908 SustainPine v3.0 2236
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative ribonucleoprotein 2.323e-11
Complete
sp_v3.0_unigene11964 SustainPine v3.0 2091
• AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: eIF3b 1.165e-08
N-terminus
sp_v3.0_unigene12016 SustainPine v3.0 1993
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.853e-11
Complete
sp_v3.0_unigene12031 SustainPine v3.0 2118
• AutoFact: polypyrimidine tract-binding protein-like [Solanum tuberosum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene12086 SustainPine v3.0 1343
• AutoFact: YIF1 integral membrane domain-containing protein n=5 Tax=Arabidopsis RepID=F4J8C0_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein YIF1A, putative 1.426e-09
Complete
sp_v3.0_unigene12172 SustainPine v3.0 704
• AutoFact: Putative DNA binding protein (Fragment) n=1 Tax=Trifolium pratense RepID=Q2PEV8_TRIPR 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nuclear acid binding protein, putative 4.798e-19
C-terminus
sp_v3.0_unigene12272 SustainPine v3.0 927
• AutoFact: endonuclease III [Arabidopsis thaliana] gb|AAD26474.2| putative endonuclease [Arabidopsis thaliana] gb|AEC08549.1| endonuclease III [Arabidopsis thaliana] 1.0e-36
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene12430 SustainPine v3.0 1001
• AutoFact: nucleic acid binding protein [Arabidopsis thaliana] gb|AAM13844.1| unknown protein [Arabidopsis thaliana] gb|AEE30872.1| nucleic acid binding protein [Arabidopsis thaliana] 9.99995e-41
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene12677 SustainPine v3.0 866
• AutoFact: Cell division protein FtsH-like protein n=3 Tax=Arabidopsis RepID=Q8LBL6_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division protease ftsH homolog 3.064e-13
Internal
sp_v3.0_unigene12788 SustainPine v3.0 513
• AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 2.616e-06
N-terminus
sp_v3.0_unigene13137 SustainPine v3.0 1362
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AED98140.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heterogeneous nuclear ribonucleoprotein, putative, expressed 3.564e-09
Complete
sp_v3.0_unigene13354 SustainPine v3.0 2959
• AutoFact: RNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9T403_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain