Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene9295 SustainPine v3.0 819
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAO41908.1| unknown protein [Arabidopsis thaliana] gb|AAO50688.1| unknown protein [Arabidopsis thaliana] gb|AEE35032.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene9389 SustainPine v3.0 2853
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Misassembled
sp_v3.0_unigene9466 SustainPine v3.0 1147
• AutoFact: Unassigned protein
• FL-Next: sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum (Blue gem) (Torenia plantagineum). 0.0
• Sma3: Desiccation-related protein PCC13-62, putative 4.502e-14
Complete
sp_v3.0_unigene9595 SustainPine v3.0 1533
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene9621 SustainPine v3.0 1957
• AutoFact: putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene9720 SustainPine v3.0 2148
• AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB09056.1| unnamed protein product [Arabidopsis thaliana] gb|AAL86001.1| unknown protein [Arabidopsis thaliana] gb|AAM45065.1| unknown protein [Arab 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-GTPase-activating protein-binding protein, putative 7.485e-09
Complete
sp_v3.0_unigene9786 SustainPine v3.0 1985
• AutoFact: DNA binding protein ACBF-like [Solanum tuberosum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene9805 SustainPine v3.0 1999
• AutoFact: bZIP_2 domain containing protein 5.0e-10
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative Complete
sp_v3.0_unigene9857 SustainPine v3.0 861
• AutoFact: Metal transporter Nramp3 n=3 Tax=Poaceae RepID=NRAM3_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nramp transporter 3.047e-19
Putative C-terminus
sp_v3.0_unigene9893 SustainPine v3.0 2344
• AutoFact: heterogeneous nuclear ribonucleoprotein r [Aedes aegypti] gb|EAT45899.1| heterogeneous nuclear ribonucleoprotein r [Aedes aegypti] 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene9945 SustainPine v3.0 3307
• AutoFact: Raffinose_syn domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Seed imbibition protein 9.15e-15
Complete
sp_v3.0_unigene9960 SustainPine v3.0 665
• AutoFact: zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] ref|NP_001030840.1| zinc finger CCCH domain-containing protein 46 [Arabidopsis thaliana] sp|Q9SV09.1|C3H46_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 46; Short=AtC3H4 2.0e-20
• FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene9980 SustainPine v3.0 1104
• AutoFact: putative transformer serine/arginine-rich ribonucleoprotein [Oryza sativa Japonica Group] gb|EAZ26366.1| hypothetical protein OsJ_10248 [Oryza sativa Japonica Group] 7.00005e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative transformer-SR ribonucleoprotein 3.175e-12
Putative Complete
sp_v3.0_unigene9997 SustainPine v3.0 741
• AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] dbj|BAB09686.1| unnamed protein product [Arabidopsis thaliana] gb|AAL32792.1| Unknown protein [Arabidopsis thaliana] gb|AAM13348.1| unknown protein [Arabidopsis thaliana] gb|AAM65119.1| 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA binding protein, putative 2.835e-08
Complete
sp_v3.0_unigene10015 SustainPine v3.0 1192
• AutoFact: Gly_rich multi-domain protein 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene10025 SustainPine v3.0 2188
• AutoFact: putative DNA binding protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene10068 SustainPine v3.0 1328
• AutoFact: glycine-rich RNA-binding protein 3 [Arabidopsis thaliana] dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana] gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana] gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana] dbj|BAH30642.1| hypo 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene10181 SustainPine v3.0 1354
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene10232 SustainPine v3.0 1571
• AutoFact: putative strictosidine synthase [Arabidopsis thaliana] gb|AAO64095.1| putative strictosidine synthase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative strictosidine synthase 2.063e-22
Complete
sp_v3.0_unigene10258 SustainPine v3.0 1372
• AutoFact: copine-like protein [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copine, putative 1.066e-20
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain