Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleotide-binding, alpha-beta plait

Term: IPR012677  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene138 SustainPine v3.0 3993
AutoFact: putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana] 0.0
FL-Next: sp=RNA-dependent RNA polymerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA-directed RNA polymerase 3.257e-20
Complete
sp_v3.0_unigene188 SustainPine v3.0 1388
AutoFact: putative phosphate/phosphoenolpyruvate translocator protein [Arabidopsis thaliana] sp|Q9SKJ7.1|PT225_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At2g25520 gb|AAD20711.1| putative phosphate/phosphoenolpyruvate translocator protein [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Plastidic phosphate translocator-like protein1 1.721e-10
Complete
sp_v3.0_unigene195 SustainPine v3.0 3806
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 8.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene199 SustainPine v3.0 2299
AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 6.971e-34
Complete
sp_v3.0_unigene228 SustainPine v3.0 1744
AutoFact: Os05g0427300 protein n=2 Tax=Oryza sativa RepID=Q0DI02_ORYSJ 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA recognition motif-containing protein 3.576e-11
Complete
sp_v3.0_unigene241 SustainPine v3.0 1733
AutoFact: pre-mRNA processing factor [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mrna splicing factor 4.959e-09
N-terminus
sp_v3.0_unigene244 SustainPine v3.0 2841
AutoFact: DNA mismatch repair protein MLH1 [Arabidopsis thaliana] emb|CAA10163.1| MLH1 protein [Arabidopsis thaliana] emb|CAB78038.1| MLH1 protein [Arabidopsis thaliana] gb|AEE82726.1| DNA mismatch repair protein MLH1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Complete
sp_v3.0_unigene247 SustainPine v3.0 2665
AutoFact: Os01g0367300 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5JJM4_ORYSJ 8.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene302 SustainPine v3.0 2446
AutoFact: Ribonucleic acid binding protein S1, putative n=1 Tax=Ricinus communis RepID=B9RI44_RICCO 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene319 SustainPine v3.0 2656
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thalia 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein At2g44720 5.669e-09
Complete
sp_v3.0_unigene362 SustainPine v3.0 870
AutoFact: PRP38_assoc multi-domain protein 3.0e-11
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene397 SustainPine v3.0 3344
AutoFact: MEI2-like protein 5 [Arabidopsis thaliana] ref|NP_849727.1| MEI2-like protein 5 [Arabidopsis thaliana] sp|Q8VWF5.1|AML5_ARATH RecName: Full=Protein MEI2-like 5; Short=AML5; AltName: Full=MEI2-like protein 5 gb|AAL32691.1| RNA-binding protein MEI2, putativ 0.0
FL-Next: sp=Protein MEI2-like 2; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene400 SustainPine v3.0 1386
AutoFact: strictosidine synthase family protein [Arabidopsis thaliana] emb|CAC34495.1| putative strictosidine synthase-like [Arabidopsis thaliana] gb|AAT44971.1| At5g22020 [Arabidopsis thaliana] gb|ABF59040.1| At5g22020 [Arabidopsis thaliana] gb|AED92969.1| stricto 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative strictosidine synthase 1.171e-25
Complete
sp_v3.0_unigene496 SustainPine v3.0 3131
AutoFact: putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene522 SustainPine v3.0 2624
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene533 SustainPine v3.0 1620
AutoFact: Desiccation-related protein PCC13-62 precursor, putative [Medicago truncatula] 0.0
FL-Next: sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum (Blue gem) (Torenia plantagineum). 0.0
Sma3: Desiccation-related protein PCC13-62, putative 3.178e-14
Complete
sp_v3.0_unigene726 SustainPine v3.0 2401
AutoFact: protein RHOMBOID-like 1 [Arabidopsis thaliana] dbj|BAF00472.1| hypothetical protein [Arabidopsis thaliana] gb|AEC08202.1| protein RHOMBOID-like 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Membrane protein 5.505e-20
Complete
sp_v3.0_unigene794 SustainPine v3.0 2511
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AEE35845.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-binding region-containing protein, putative 5.489e-11
Complete
sp_v3.0_unigene834 SustainPine v3.0 3347
AutoFact: RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] gb|AEE75227.1| RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene873 SustainPine v3.0 1436
AutoFact: putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor, arginine/serine-rich 2 7.149e-16
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain