Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleotide-binding, alpha-beta plait

Term: IPR012677  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene161415 SustainPine v3.0 365
AutoFact: Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] dbj|BAB09816.1| unnamed protein product [Arabidopsis thaliana] gb|AED91069.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] 1.0e-19
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene161642 SustainPine v3.0 263
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene161906 SustainPine v3.0 357
AutoFact: zf-LYAR domain containing protein 3.0e-11
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: RNA-binding protein 5.808e-07
Putative N-terminus
sp_v3.0_unigene162352 SustainPine v3.0 408
AutoFact: CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] emb|CAB75492.1| putative protein [Arabidopsis thaliana] gb|AEE78053.1| CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] 3.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene162460 SustainPine v3.0 358
AutoFact: Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Picea sitchensis RepID=A9NNT0_PICSI 1.0e-26
FL-Next: sp=Eukaryotic translation initiation factor 3 subunit G; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene162510 SustainPine v3.0 143
AutoFact: pre-mRNA branch site protein p14 [Arabidopsis thaliana] ref|XP_002873554.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] sp|Q9FMP4.1|PM14_ARATH RecName: Full=Pre-mRNA branch site p14-like protein dbj|BAB10037.1| unnamed prot 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mRNA branch site p14-like protein 1.746e-09
Putative C-terminus
sp_v3.0_unigene162806 SustainPine v3.0 453
AutoFact: Putative RRM-containing protein SEB-4 n=3 Tax=Poaceae RepID=Q5N8W4_ORYSJ 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-binding region-containing protein, putative 1.231e-19
N-terminus
sp_v3.0_unigene162836 SustainPine v3.0 322
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 4.0e-07
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene163080 SustainPine v3.0 360
AutoFact: Copine (Calcium-dependent phospholipid-binding protein) family protein [Arabidopsis thaliana] gb|AEE34698.1| Copine (Calcium-dependent phospholipid-binding protein) family protein [Arabidopsis thaliana] 1.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copine, putative 6.434e-17
Internal
sp_v3.0_unigene163222 SustainPine v3.0 328
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene163312 SustainPine v3.0 331
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene163365 SustainPine v3.0 320
AutoFact: Unassigned protein 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene163379 SustainPine v3.0 250
AutoFact: NRAMP family metal transporter n=1 Tax=Chengiopanax sciadophylloides RepID=Q2Z1Q0_CHESC 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nramp transporter 2.614e-23
Internal
sp_v3.0_unigene163392 SustainPine v3.0 285
AutoFact: [E] COG0531 Amino acid transporters 6.0e-08
FL-Next: sp=Amino-acid permease BAT1 homolog; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Putative GABA-specific permease 1.205e-20
C-terminus
sp_v3.0_unigene163623 SustainPine v3.0 416
AutoFact: RNA Binding Protein 45 [Nicotiana plumbaginifolia] 7.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene163688 SustainPine v3.0 163
AutoFact: Unassigned protein 1.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene165805 SustainPine v3.0 476
AutoFact: Splicing factor U2af small subunit B [Arabidopsis thaliana] ref|NP_974870.1| Splicing factor U2af small subunit B [Arabidopsis thaliana] sp|Q9FMY5.1|U2AFB_ARATH RecName: Full=Splicing factor U2af small subunit B; AltName: Full=U2 auxiliary factor 35 kDa s 4.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.746e-11
N-terminus
sp_v3.0_unigene165813 SustainPine v3.0 449
AutoFact: 40S ribosomal protein S24 n=1 Tax=Tuber melanosporum Mel28 RepID=D5GL13_TUBMM 2.0e-26
FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S24 0.0
C-terminus
sp_v3.0_unigene165899 SustainPine v3.0 467
AutoFact: putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp|C0LGG7.2|Y1534_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At1g53420; Flags: Precursor gb|AEE32938.1| putative LRR receptor-like serine 5.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr19 scaffold_4, whole genome shotgun sequence 1.96e-13
Putative N-terminus
sp_v3.0_unigene166197 SustainPine v3.0 350
AutoFact: [J] COG0030 Dimethyladenosine transferase (rRNA methylation) 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dimethyladenosine transferase 8.127e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain