Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleotide-binding, alpha-beta plait

Term: IPR012677  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene157076 SustainPine v3.0 274
• AutoFact: Polyadenylate-binding protein n=6 Tax=Ajellomyces RepID=C0NSS5_AJECG 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyadenlyte binding protein 6.335e-06
C-terminus
sp_v3.0_unigene157210 SustainPine v3.0 310
• AutoFact: RNA-binding region RNP-1 domain-containing protein n=1 Tax=Polysphondylium pallidum RepID=D3AVQ3_POLPA 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyadenlyte binding protein 6.335e-06
C-terminus
sp_v3.0_unigene157731 SustainPine v3.0 392
• AutoFact: 40S ribosomal protein S24 n=2 Tax=Picea sitchensis RepID=A9NKN3_PICSI 8.0e-27
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
C-terminus
sp_v3.0_unigene157830 SustainPine v3.0 332
• AutoFact: ribosomal protein L25-like protein [Solanum tuberosum] 4.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 2.195e-10
Putative N-terminus
sp_v3.0_unigene158193 SustainPine v3.0 456
• AutoFact: polypyrimidine tract binding protein-like [Danio rerio] 3.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene158226 SustainPine v3.0 256
• AutoFact: pre-mRNA branch site protein p14 [Arabidopsis thaliana] ref|XP_002873554.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] sp|Q9FMP4.1|PM14_ARATH RecName: Full=Pre-mRNA branch site p14-like protein dbj|BAB10037.1| unnamed prot 7.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
C-terminus
sp_v3.0_unigene158455 SustainPine v3.0 333
• AutoFact: PREDICTED: similar to ribosomal protein L23a n=1 Tax=Ciona intestinalis RepID=UPI00006A76DE 4.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L23a 3.983e-09
C-terminus
sp_v3.0_unigene158538 SustainPine v3.0 492
• AutoFact: PremRNAsplicing factor 38B putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WLM7_9STRA 2.0e-14
• FL-Next: tr=PremRNAsplicing factor 38B putative; Albugo laibachii Nc14. 0.0
Internal
sp_v3.0_unigene158584 SustainPine v3.0 509
• AutoFact: Ribosomal protein S2 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9C019_9EUKA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S2 2.512e-19
N-terminus
sp_v3.0_unigene158787 SustainPine v3.0 392
• AutoFact: Ribosomal protein rpl23a (Fragment) n=1 Tax=Lineus viridis RepID=B0Z9M5_9BILA 3.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 1.992e-10
N-terminus
sp_v3.0_unigene158964 SustainPine v3.0 365
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.0e-12
• FL-Next: tr=Putative uncharacterized protein; Ectocarpus siliculosus (Brown alga). 0.0
Putative C-terminus
sp_v3.0_unigene159015 SustainPine v3.0 290
• AutoFact: 60S ribosomal protein n=1 Tax=Aureococcus anophagefferens RepID=F0YN25_9STRA 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 2.762e-10
C-terminus
sp_v3.0_unigene159102 SustainPine v3.0 265
• AutoFact: glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40] ref|XP_002376652.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus flavus NRRL3357] dbj|BAE58923.1| unnamed protein product [Aspergillus oryzae RIB40] gb|EED53406.1| heterogen 1.0e-21
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 7.776e-30
N-terminus
sp_v3.0_unigene159138 SustainPine v3.0 333
• AutoFact: Ribosomal protein L23a n=2 Tax=Chlamydomonadales RepID=A8J239_CHLRE 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L23a 3.983e-09
Putative C-terminus
sp_v3.0_unigene159237 SustainPine v3.0 335
• AutoFact: ribosomal biogenesis protein Gar2 [Neosartorya fischeri NRRL 181] gb|EAW25486.1| ribosomal biogenesis protein Gar2 [Neosartorya fischeri NRRL 181] 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene159733 SustainPine v3.0 394
• AutoFact: 40S ribosomal protein S24 n=5 Tax=Physcomitrella patens subsp. patens RepID=A9U2W2_PHYPA 1.0e-37
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Putative Complete
sp_v3.0_unigene160139 SustainPine v3.0 459
• AutoFact: Probable RPL25-ribosomal protein L23a.e n=2 Tax=Ustilaginaceae RepID=E6ZVX9_9BASI 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 2.412e-10
Complete
sp_v3.0_unigene160578 SustainPine v3.0 485
• AutoFact: putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group] gb|EAZ14353.1| hypothetical p 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-binding region-containing protein, putative 1.231e-19
Putative N-terminus
sp_v3.0_unigene160859 SustainPine v3.0 458
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene161285 SustainPine v3.0 357
• AutoFact: receptor-like protein kinase THESEUS 1 [Arabidopsis thaliana] sp|Q9LK35.1|THE1_ARATH RecName: Full=Receptor-like protein kinase THESEUS 1; Flags: Precursor dbj|BAA98098.1| receptor-protein kinase-like protein [Arabidopsis thaliana] gb|AED96490.1| receptor 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: FERONIA receptor-like kinase 5.431e-18
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain