Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleotide-binding, alpha-beta plait

Term: IPR012677  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene155079 SustainPine v3.0 321
• AutoFact: MRD1-like protein n=3 Tax=Metarhizium RepID=E9EMI6_METAR 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene155086 SustainPine v3.0 519
• AutoFact: ribosomal protein L23a [Argopecten irradians] 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 2.412e-10
N-terminus
sp_v3.0_unigene155188 SustainPine v3.0 478
• AutoFact: PREDICTED: similar to ribosomal protein L23a n=1 Tax=Ciona intestinalis RepID=UPI00006A76DE 7.00649e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L23a 3.983e-09
Putative Complete
sp_v3.0_unigene155229 SustainPine v3.0 507
• AutoFact: Cyclophilin, putative n=4 Tax=Plasmodium RepID=A5K4H5_PLAVS 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene155289 SustainPine v3.0 418
• AutoFact: Ribosomal protein L23a (Fragment) n=1 Tax=Argopecten irradians RepID=Q8ITB8_AEQIR 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L23a 3.983e-09
C-terminus
sp_v3.0_unigene155440 SustainPine v3.0 485
• AutoFact: putative U1 small nuclear ribonucleoprotein 70 kDa [Arabidopsis thaliana] 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative U1 small nuclear ribonucleoprotein 70 kDa 2.438e-09
Putative Complete
sp_v3.0_unigene155530 SustainPine v3.0 504
• AutoFact: RNA-binding glycine rich protein [Nicotiana sylvestris] gb|ADG03639.1| RNA-binding glycine-rich protein [Nicotiana tabacum] 1.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 7 2.683e-10
Putative C-terminus
sp_v3.0_unigene155686 SustainPine v3.0 439
• AutoFact: splicing factor 3b, subunit 4, 49kDa [Xenopus laevis] gb|AAH45264.1| Spx-prov protein [Xenopus laevis] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative spliceosome associated protein 1.318e-08
Internal
sp_v3.0_unigene155701 SustainPine v3.0 390
• AutoFact: Endonuclease III homolog n=1 Tax=Schizosaccharomyces pombe 972h- RepID=NTH1_SCHPO 1.0e-36
• FL-Next: tr=Predicted protein; Ostreococcus lucimarinus (strain CCE9901). 0.0
Internal
sp_v3.0_unigene155756 SustainPine v3.0 425
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
Complete
sp_v3.0_unigene155854 SustainPine v3.0 530
• AutoFact: DUF1777 multi-domain protein 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
C-terminus
sp_v3.0_unigene156381 SustainPine v3.0 345
• AutoFact: 60S ribosomal protein L23a n=7 Tax=core eudicotyledons RepID=RL23A_TOBAC 4.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L23a 3.983e-09
C-terminus
sp_v3.0_unigene156499 SustainPine v3.0 353
• AutoFact: Ribosomal protein L23a n=2 Tax=Chlamydomonadales RepID=A8J239_CHLRE 4.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 2.384e-10
N-terminus
sp_v3.0_unigene156598 SustainPine v3.0 358
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=2 Tax=Oikopleura dioica RepID=E4YT26_OIKDI 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene156617 SustainPine v3.0 344
• AutoFact: 60S ribosomal protein n=1 Tax=Aureococcus anophagefferens RepID=F0YN25_9STRA 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L23a 3.983e-09
C-terminus
sp_v3.0_unigene156671 SustainPine v3.0 409
• AutoFact: Ribosomal protein rpl23a (Fragment) n=1 Tax=Arenicola marina RepID=A8UFC5_AREMA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 2.642e-10
Putative Complete
sp_v3.0_unigene156875 SustainPine v3.0 424
• AutoFact: PREDICTED: similar to U1 small nuclear ribonucleoprotein A [Tribolium castaneum] gb|EFA00191.1| hypothetical protein TcasGA2_TC003016 [Tribolium castaneum] 1.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Spliceosomal protein 5.028e-09
C-terminus
sp_v3.0_unigene156881 SustainPine v3.0 331
• AutoFact: TIDP3207; LOC100285059; K12872 pre-mRNA-splicing factor RBM22/SLT11 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RRM-containing RNA-binding protein-like protein 6.985e-09
Putative N-terminus
sp_v3.0_unigene156967 SustainPine v3.0 339
• AutoFact: Polyadenylate-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIF4_RICCO 4.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-binding protein 8A 1.186e-07
Internal
sp_v3.0_unigene157053 SustainPine v3.0 405
• AutoFact: 40S ribosomal protein S24 n=5 Tax=Physcomitrella patens subsp. patens RepID=A9U2W2_PHYPA 1.0e-37
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain