Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleotide-binding, alpha-beta plait

Term: IPR012677  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene150302 SustainPine v3.0 277
• AutoFact: 40S ribosomal protein S24 n=11 Tax=Poaceae RepID=C5XIE4_SORBI 6.0e-16
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
C-terminus
sp_v3.0_unigene150427 SustainPine v3.0 287
• AutoFact: 40S ribosomal protein S24 n=11 Tax=Poaceae RepID=C5XIE4_SORBI 8.0e-19
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 0.0
C-terminus
sp_v3.0_unigene150646 SustainPine v3.0 387
• AutoFact: [J] COG0089 Ribosomal protein L23 5.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L23a 3.983e-09
C-terminus
sp_v3.0_unigene150710 SustainPine v3.0 389
• AutoFact: Ribosomal protein L23a (Fragment) n=1 Tax=Argopecten irradians RepID=Q8ITB8_AEQIR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L23a 3.983e-09
Putative C-terminus
sp_v3.0_unigene150721 SustainPine v3.0 334
• AutoFact: Ribosomal protein L23a n=1 Tax=Aedes albopictus RepID=Q49B50_AEDAL 1.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L23a 4.959e-09
C-terminus
sp_v3.0_unigene150762 SustainPine v3.0 444
• AutoFact: 40S ribosomal protein S24 n=1 Tax=Branchiostoma floridae RepID=C3Z5D0_BRAFL 3.99931e-42
• FL-Next: sp=40S ribosomal protein S24-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: 40S ribosomal protein S24 0.0
Complete
sp_v3.0_unigene150790 SustainPine v3.0 469
• AutoFact: Polyadenlyte binding protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CFU7_THAPS 4.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyadenlyte binding protein 7.31e-06
Putative C-terminus
sp_v3.0_unigene150867 SustainPine v3.0 323
• AutoFact: Very similar to receptor-like serine/threonine kinase [Arabidopsis thaliana] 8.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative Receptor-like serine/threonine kinase(RFK1) 1.327e-12
Internal
sp_v3.0_unigene151063 SustainPine v3.0 317
• AutoFact: PREDICTED: nuclear cap-binding protein subunit 2-like n=1 Tax=Meleagris gallopavo RepID=UPI0002035C1F 1.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nuclear cap-binding protein 3.771e-11
Internal
sp_v3.0_unigene151081 SustainPine v3.0 432
• AutoFact: Cleavage stimulation factor subunit 2 (Fragment) n=1 Tax=Angiostrongylus cantonensis RepID=F5GTJ9_9BILA 8.0e-30
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
N-terminus
sp_v3.0_unigene151365 SustainPine v3.0 329
• AutoFact: 40S ribosomal protein S24 n=1 Tax=Tetrahymena thermophila RepID=E6PBU2_TETTH 1.0e-17
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S24 1.392e-36
N-terminus
sp_v3.0_unigene151529 SustainPine v3.0 413
• AutoFact: Ribosomal protein L23a (Fragment) n=1 Tax=Argopecten irradians RepID=Q8ITB8_AEQIR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L23a 3.983e-09
C-terminus
sp_v3.0_unigene151627 SustainPine v3.0 166
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Arthrodermataceae RepID=F2S5E4_TRITO 5.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene151640 SustainPine v3.0 505
• AutoFact: ribosomal protein L23a [Pteris vittata] 2.8026e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L23a 3.983e-09
Complete
sp_v3.0_unigene151677 SustainPine v3.0 352
• AutoFact: RNA-binding protein with serine-rich domain 1 n=20 Tax=Amniota RepID=RNPS1_HUMAN 3.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative arginine/serine-rich protein-like 2.924e-06
Internal
sp_v3.0_unigene151873 SustainPine v3.0 262
• AutoFact: 60S ribosomal protein L23a n=1 Tax=Daucus carota RepID=RL23A_DAUCA 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L23a 2.918e-10
Putative C-terminus
sp_v3.0_unigene151893 SustainPine v3.0 438
• AutoFact: ribosomal protein L25-like protein [Solanum tuberosum] 4.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L23a 3.279e-09
C-terminus
sp_v3.0_unigene151957 SustainPine v3.0 359
• AutoFact: Protein MEI2-like 1 n=2 Tax=Arabidopsis RepID=AML1_ARATH 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AML1 9.593e-09
C-terminus
sp_v3.0_unigene152014 SustainPine v3.0 549
• AutoFact: DNAdirected RNA polymerase II 19 kDa polypeptide pu n=2 Tax=Oomycetes RepID=F0WFZ2_9STRA 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: RNA polymerase II subunit B7 1.86e-09
C-terminus
sp_v3.0_unigene152091 SustainPine v3.0 447
• AutoFact: RNA recognition motif, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KKB9_9ALVE 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain