Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: WD40-repeat-containing domain

Term: IPR017986  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene157730 SustainPine v3.0 283
• AutoFact: U3 small nucleolar RNA-associated protein 18 n=1 Tax=Phytophthora infestans T30-4 RepID=D0MWK6_PHYIT 9.0e-16
• FL-Next: sp=U3 small nucleolar RNA-associated protein 18 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Anthranilate synthase. anthranilate synthetase. chorismate lyase 6.823e-06
C-terminus
sp_v3.0_unigene157789 SustainPine v3.0 365
• AutoFact: WD40 repeat-containing protein n=1 Tax=Polysphondylium pallidum RepID=D3BD99_POLPA 1.4013e-45
• FL-Next: sp=Coatomer subunit beta'-2; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Coatomer subunit beta'-2 2.835e-08
Internal
sp_v3.0_unigene157797 SustainPine v3.0 465
• AutoFact: RNA helicase involved in maturation of 18S rRNA [Scheffersomyces stipitis CBS 6054] sp|A3GFV3.1|FAL1_PICST RecName: Full=ATP-dependent RNA helicase FAL1 gb|EAZ63408.1| RNA helicase involved in maturation of 18S rRNA [Pichia stipitis CBS 6054] 4.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.406e-09
C-terminus
sp_v3.0_unigene157885 SustainPine v3.0 350
• AutoFact: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 n=2 Tax=Pucciniales RepID=E3K0E6_PUCGT 1.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Guanine nucleotide-binding protein subunit beta 3.748e-11
C-terminus
sp_v3.0_unigene157953 SustainPine v3.0 496
• AutoFact: RecName: Full=60S ribosomal protein L21 gb|AAC64142.1| ribosomal protein L21E [Cyanophora paradoxa] 5.60519e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L21 4.034e-10
Putative Complete
sp_v3.0_unigene158034 SustainPine v3.0 334
• AutoFact: U5 snRNP complex subunit, putative n=2 Tax=Metarhizium RepID=E9EMT1_METAR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U5 snRNP-specific protein 3.899e-06
Internal
sp_v3.0_unigene158316 SustainPine v3.0 117
• AutoFact: eIF5A n=2 Tax=Percomorpha RepID=C5HBN1_PAROL 7.0e-13
• FL-Next: tr=Eukaryotic translation initiation factor 5A; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 1.956e-28
Internal
sp_v3.0_unigene158452 SustainPine v3.0 291
• AutoFact: catabolite degradation protein [Aspergillus fumigatus Af293] gb|EAL86064.1| catabolite degradation protein, putative [Aspergillus fumigatus Af293] 5.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WD-repeat protein-like 1.167e-07
C-terminus
sp_v3.0_unigene158464 SustainPine v3.0 409
• AutoFact: WD repeat domain phosphoinositide-interacting protein 3 [Dictyostelium discoideum AX4] gb|EAL66150.1| WD repeat domain phosphoinositide-interacting protein 3 [Dictyostelium discoideum AX4] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WD-repeat domain phosphoinositide-interacting protein 3 7.997e-09
Internal
sp_v3.0_unigene158483 SustainPine v3.0 202
• AutoFact: Histone-binding protein RBBP4 n=2 Tax=Chromadorea RepID=F1L403_ASCSU 6.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleosome remodeling factor 3.899e-06
Internal
sp_v3.0_unigene158595 SustainPine v3.0 427
• AutoFact: Eukaryotic translation initiation factor 5A-1 n=3 Tax=Onygenales RepID=C4JVG1_UNCRE 5.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 6.601e-28
N-terminus
sp_v3.0_unigene158608 SustainPine v3.0 401
• AutoFact: Guanine nucleotide-binding protein subunit beta-2-like protein (Fragment) n=1 Tax=Angiostrongylus cantonensis RepID=F5GTH9_9BILA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Guanine nucleotide-binding protein subunit beta-like protein 2.648e-18
N-terminus
sp_v3.0_unigene158641 SustainPine v3.0 437
• AutoFact: RecName: Full=Eukaryotic translation initiation factor 5A-2; Short=eIF-5A-2; AltName: Full=eIF-4D emb|CAA45104.1| eukaryotic initiation factor 5A (2) [Nicotiana plumbaginifolia] 1.0e-23
• FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 1.605e-24
C-terminus
sp_v3.0_unigene158677 SustainPine v3.0 397
• AutoFact: PREDICTED: eukaryotic translation initiation factor 4A-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBC11C 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.182e-11
C-terminus
sp_v3.0_unigene158694 SustainPine v3.0 439
• AutoFact: Peptide chain release factor 1 n=1 Tax=Polymorphum gilvum SL003B-26A1 RepID=F2J340_POLGS 9.0e-37
• FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
• Sma3: Putative peptide chain release factor 2.791e-12
Putative C-terminus
sp_v3.0_unigene158820 SustainPine v3.0 184
• AutoFact: Pre-mRNA-splicing factor n=2 Tax=Metarhizium RepID=E9EL99_METAR 1.0e-23
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene158900 SustainPine v3.0 298
• AutoFact: COP-II coat subunit n=1 Tax=Chlamydomonas reinhardtii RepID=A8JD99_CHLRE 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene158988 SustainPine v3.0 414
• AutoFact: Unassigned protein
• FL-Next: sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene158989 SustainPine v3.0 393
• AutoFact: Eukaryotic initiation factor 4A n=3 Tax=Ditrysia RepID=B0FYV2_PLUXY 9.99967e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Eukaryotic initiation factor 4A-like protein 9.322e-08
Internal
sp_v3.0_unigene159001 SustainPine v3.0 171
• AutoFact: PREDICTED: LOW QUALITY PROTEIN: guanine nucleotide-binding protein subunit beta-2-like 1-like n=5 Tax=Amniota RepID=UPI0001D62689 7.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Guanine nucleotide-binding protein subunit beta-like protein 3.182e-15
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain