Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: WD40-repeat-containing domain

Term: IPR017986  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene14239 SustainPine v3.0 725
AutoFact: glycine-rich protein [Arabidopsis thaliana] ref|NP_001190893.1| glycine-rich protein [Arabidopsis thaliana] ref|NP_001190894.1| glycine-rich protein [Arabidopsis thaliana] gb|AEE86144.1| glycine-rich protein [Arabidopsis thaliana] gb|AEE86145.1| glycine-r 0.0
FL-Next: tr=Putative uncharacterized protein Sb09g005780; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v3.0_unigene14494 SustainPine v3.0 558
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene14553 SustainPine v3.0 715
AutoFact: Serine/threonine-protein phosphatase BSL2 n=9 Tax=rosids RepID=BSL2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine protein phosphatase 3.171e-29
Internal
sp_v3.0_unigene14563 SustainPine v3.0 582
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AED90947.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene14918 SustainPine v3.0 1959
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T7M5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 2.708e-14
Putative Complete
sp_v3.0_unigene14997 SustainPine v3.0 754
AutoFact: enhancer of mRNA-decapping protein 4 [Arabidopsis thaliana] gb|AEE75331.1| enhancer of mRNA-decapping protein 4 [Arabidopsis thaliana] 4.00001e-40
FL-Next: Isoform 2 of Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana GN=VCS 0.0
N-terminus
sp_v3.0_unigene15102 SustainPine v3.0 1473
AutoFact: WD-40 repeat protein-like [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: Putative WD-40 repeat protein 4.182e-07
C-terminus
sp_v3.0_unigene15330 SustainPine v3.0 648
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Sma3: cDNA clone:J033080F08, full insert sequence 7.31e-06
Putative N-terminus
sp_v3.0_unigene15492 SustainPine v3.0 721
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAB51411.1| putative protein [Arabidopsis thaliana] emb|CAB81228.1| putative protein [Arabidopsis thaliana] gb|AEE82991.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana 3.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene15607 SustainPine v3.0 1849
AutoFact: WD-repeat protein, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene15756 SustainPine v3.0 928
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AEE82445.1| transducin/WD40 domain-cont 5.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene15797 SustainPine v3.0 1487
AutoFact: putative tRNA 2'phosphotransferase [Arabidopsis thaliana] gb|AEC10539.1| putative tRNA 2'phosphotransferase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene15900 SustainPine v3.0 515
AutoFact: F-box and wd40 domain protein, putative n=1 Tax=Ricinus communis RepID=B9R8Y5_RICCO 6.0e-16
FL-Next: tr=F-box and wd40 domain protein, putative; Ricinus communis (Castor bean). 0.0
Sma3: Putative uncharacterized protein F11C1_230 8.772e-06
C-terminus
sp_v3.0_unigene15931 SustainPine v3.0 2562
AutoFact: DNA damage-binding protein 2 [Arabidopsis thaliana] sp|Q6NQ88.1|DDB2_ARATH RecName: Full=Protein DAMAGED DNA-BINDING 2; AltName: Full=UV-damaged DNA-binding protein 2 gb|AAQ65193.1| At5g58760 [Arabidopsis thaliana] dbj|BAD42887.1| putative protein [Arabid 0.0
FL-Next: sp=Protein DAMAGED DNA-BINDING 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene16078 SustainPine v3.0 588
AutoFact: Katanin p80 WD40 repeat-containing subunit B1-1 [Arabidopsis thaliana] gb|AED93167.1| Katanin p80 WD40 repeat-containing subunit B1-1 [Arabidopsis thaliana] 6.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Katanin p80 subunit-like protein 7.21e-13
Internal
sp_v3.0_unigene16088 SustainPine v3.0 1120
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AEE78537.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 9.99967e-42
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Os01g0702400 protein 8.772e-06
C-terminus
sp_v3.0_unigene16130 SustainPine v3.0 4773
AutoFact: Family 2 glycosyltransferase n=1 Tax=Selaginella moellendorffii RepID=D8QXH9_SELML 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Sma3: Cellulose synthase 0.0
Complete
sp_v3.0_unigene16370 SustainPine v3.0 247
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76753.1| pentatric 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene16389 SustainPine v3.0 351
AutoFact: 60S ribosomal protein L21 n=2 Tax=Postia placenta Mad-698-R RepID=B8P5U9_POSPM 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L21 4.034e-10
N-terminus
sp_v3.0_unigene16852 SustainPine v3.0 855
AutoFact: Protein translocase subunit secA (Fragment) n=2 Tax=Vitis vinifera RepID=E0CR18_VITVI 0.0
FL-Next: Isoform 2 of Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana GN=SECA2 0.0
Sma3: Protein translocase subunit secA 1.852e-19
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain