Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: WD40-repeat-containing domain

Term: IPR017986  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene13030 SustainPine v3.0 2005
AutoFact: DEAD-box ATP-dependent RNA helicase 2 n=6 Tax=BEP clade RepID=RH2_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 3.219e-09
Putative Complete
sp_v3.0_unigene13079 SustainPine v3.0 1635
AutoFact: Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 2.811e-09
Putative Complete
sp_v3.0_unigene13276 SustainPine v3.0 3958
AutoFact: Cellulose synthase n=13 Tax=core eudicotyledons RepID=B9IKV7_POPTR 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Sma3: Cellulose synthase 0.0
Complete
sp_v3.0_unigene13298 SustainPine v3.0 562
AutoFact: WD-repeat protein, putative 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene13359 SustainPine v3.0 704
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene13435 SustainPine v3.0 818
AutoFact: syntaxin binding protein 5 (tomosyn) [Arabidopsis thaliana] dbj|BAB11546.1| unnamed protein product [Arabidopsis thaliana] gb|AED90890.1| syntaxin binding protein 5 (tomosyn) [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene13520 SustainPine v3.0 2970
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB02018.1| WD40-repeat protein [Arabidopsis thaliana] gb|AAL32514.1| WD40-repeat protein [Arabidopsis thaliana] gb|AAM47943.1| WD40-repeat protein [Arabidopsis thaliana] gb|AEE76041.1| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 3.878e-06
Complete
sp_v3.0_unigene13652 SustainPine v3.0 867
AutoFact: Unassigned protein
FL-Next: tr=WD repeat and FYVE domain-containing protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene13667 SustainPine v3.0 3468
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] ref|NP_850516.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAL07141.1| unknown protein [Arabidopsis thaliana] gb|AAM83246.1| AT3g05090/T12H1_5 [Arabidopsis thalia 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene13809 SustainPine v3.0 2820
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|ACI46510.1| At5g11240 [Arabidopsis thaliana] gb|AED91651.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Complete
sp_v3.0_unigene13822 SustainPine v3.0 1764
AutoFact: Aladin-related / adracalin-related protein n=3 Tax=Arabidopsis RepID=Q8GWR1_ARATH 0.0
FL-Next: sp=Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Complete
sp_v3.0_unigene13876 SustainPine v3.0 651
AutoFact: glycine-rich protein [Arabidopsis thaliana] ref|NP_001190893.1| glycine-rich protein [Arabidopsis thaliana] ref|NP_001190894.1| glycine-rich protein [Arabidopsis thaliana] gb|AEE86144.1| glycine-rich protein [Arabidopsis thaliana] gb|AEE86145.1| glycine-r 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene14023 SustainPine v3.0 2301
AutoFact: Pre-mRNA splicing factor n=1 Tax=Cucumis melo subsp. melo RepID=E5GBJ7_CUCME 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene14025 SustainPine v3.0 656
AutoFact: [R] COG2319 FOG: WD40 repeat 5.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: F-box and wd40 domain protein, putative 6.465e-17
Putative C-terminus
sp_v3.0_unigene14045 SustainPine v3.0 2492
AutoFact: pfam02138, Beach, Beige/BEACH domain 1.96182e-44
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
C-terminus
sp_v3.0_unigene14128 SustainPine v3.0 820
AutoFact: PREDICTED: similar to neutral sphingomyelinase (n-smase) activation associated factor fan [Nasonia vitripennis] 6.0e-16
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene14169 SustainPine v3.0 465
AutoFact: Unassigned protein
FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Transcriptional corepressor LEUNIG 1.89e-09
N-terminus
sp_v3.0_unigene14183 SustainPine v3.0 779
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAB51411.1| putative protein [Arabidopsis thaliana] emb|CAB81228.1| putative protein [Arabidopsis thaliana] gb|AEE82991.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana 5.0e-26
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
C-terminus
sp_v3.0_unigene14198 SustainPine v3.0 833
AutoFact: putative alliin lyase [Arabidopsis thaliana] emb|CAB79377.1| putative alliin lyase [Arabidopsis thaliana] 0.0
FL-Next: sp=Tryptophan aminotransferase-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome undetermined scaffold_213, whole genome shotgun sequence 7.607e-13
C-terminus
sp_v3.0_unigene14213 SustainPine v3.0 920
AutoFact: syntaxin binding protein 5 (tomosyn) [Arabidopsis thaliana] dbj|BAB11546.1| unnamed protein product [Arabidopsis thaliana] gb|AED90890.1| syntaxin binding protein 5 (tomosyn) [Arabidopsis thaliana] 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain