Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: WD40 repeat, conserved site

Term: IPR019775  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene168259 SustainPine v3.0 238
• AutoFact: Putative Putative Pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Brassica oleracea RepID=Q5FAL7_BRAOL 4.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 1.597e-09
Internal
sp_v3.0_unigene168281 SustainPine v3.0 181
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 6.968e-06
Internal
sp_v3.0_unigene168283 SustainPine v3.0 156
• AutoFact: cell division cycle 20, cofactor of APC complex [Arabidopsis thaliana] emb|CAB38785.1| WD-repeat protein-like protein [Arabidopsis thaliana] emb|CAB80044.1| WD-repeat protein-like protein [Arabidopsis thaliana] gb|ABG48494.1| At4g33270 [Arabidopsis thalia 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division cycle, putative 3.204e-07
Internal
sp_v3.0_unigene168284 SustainPine v3.0 131
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070 gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07259.1| pentatricopeptide repe 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene168306 SustainPine v3.0 233
• AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
Internal
sp_v3.0_unigene168693 SustainPine v3.0 335
• AutoFact: FAP multi-domain protein 2.0e-16
• Sma3: Glycine-rich protein 2.012e-11
coding
sp_v3.0_unigene169684 SustainPine v3.0 327
• AutoFact: GRP multi-domain protein 3.0e-16
• Sma3: Glycine-rich protein 2.897e-16
coding
sp_v3.0_unigene171386 SustainPine v3.0 283
• AutoFact: Herpes_gp2 multi-domain protein 2.0e-14
• Sma3: Glycine-rich protein 9.342e-12
coding
sp_v3.0_unigene182991 SustainPine v3.0 614
• AutoFact: Receptor-kinase, putative n=1 Tax=Ricinus communis RepID=B9SZK5_RICCO 5.0e-39
• FL-Next: tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
• Sma3: Serine-threonine protein kinase, plant-type, putative 9.903e-21
Internal
sp_v3.0_unigene183075 SustainPine v3.0 637
• AutoFact: ubiquitin-conjugating enzyme family protein [Entamoeba histolytica HM-1:IMSS] gb|EAL42926.1| ubiquitin-conjugating enzyme family protein [Entamoeba histolytica HM-1:IMSS] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carrier protein 6.378e-36
Complete
sp_v3.0_unigene183345 SustainPine v3.0 227
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene183535 SustainPine v3.0 382
• AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAK50091.1|AF372951_1 At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AAN72242.1| At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AEE36064.1| transducin/WD-40 repeat-containing protein [Arab 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WD-repeat protein-like 1.933e-13
C-terminus
sp_v3.0_unigene183636 SustainPine v3.0 635
• AutoFact: Protein kinase [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_278, whole genome shotgun sequence 2.285e-15
Putative C-terminus
sp_v3.0_unigene183676 SustainPine v3.0 767
• AutoFact: WD-repeat protein, putative 1.00053e-42
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene183716 SustainPine v3.0 340
• AutoFact: Senescence-associated protein n=1 Tax=Elaeis guineensis RepID=B3TLS7_ELAGV 1.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Senescence-associated protein 1.022e-09
N-terminus
sp_v3.0_unigene183762 SustainPine v3.0 407
• AutoFact: cysteine-rich receptor-like protein kinase 7 [Arabidopsis thaliana] sp|Q8L7G3.1|CRK7_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 7; Short=Cysteine-rich RLK7; Flags: Precursor gb|AAM91654.1| putative serine/threonine kinase [Arabidopsis 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_278, whole genome shotgun sequence 1.651e-15
Internal
sp_v3.0_unigene183901 SustainPine v3.0 423
• AutoFact: Endo-beta-1,4-glucanase n=1 Tax=Pinus radiata RepID=O64401_PINRA 2.00386e-43
• FL-Next: tr=Endo-beta-1,4-glucanase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Sma3: Endo-beta-1,4-glucanase 3.825e-37
Internal
sp_v3.0_unigene183987 SustainPine v3.0 852
• AutoFact: 3-ketoacyl-CoA synthase n=1 Tax=Picea sitchensis RepID=A9NVH1_PICSI 0.0
• FL-Next: sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Acyltransferase, putative 1.741e-36
C-terminus
sp_v3.0_unigene184235 SustainPine v3.0 713
• AutoFact: GTP-binding regulatory protein beta chain homolog-Ch (ISS) n=2 Tax=Ostreococcus RepID=Q00X27_OSTTA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Guanine nucleotide-binding protein subunit beta-like protein 3.156e-18
C-terminus
sp_v3.0_unigene184356 SustainPine v3.0 579
• AutoFact: Niemann-Pick C1 protein [Arabidopsis thaliana] gb|AEE31919.1| Niemann-Pick C1 protein [Arabidopsis thaliana] 4.00001e-41
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Cholesterol transport protein 2.258e-09
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain