Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: WD40 repeat, conserved site

Term: IPR019775  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene162258 SustainPine v3.0 454
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 2.94273e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
N-terminus
sp_v3.0_unigene162470 SustainPine v3.0 377
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative, expressed 5.377e-10
C-terminus
sp_v3.0_unigene162577 SustainPine v3.0 297
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 9.646e-11
Internal
sp_v3.0_unigene162624 SustainPine v3.0 191
• AutoFact: Protein tipD, putative n=1 Tax=Ricinus communis RepID=B9RAQ4_RICCO 6.0e-06
• FL-Next: tr=Nucleotide binding protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
• Sma3: Protein tipD, putative 5.361e-06
N-terminus
sp_v3.0_unigene162650 SustainPine v3.0 252
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB 3.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
Internal
sp_v3.0_unigene162688 SustainPine v3.0 387
• AutoFact: Endo-beta-1,4-glucanase n=1 Tax=Pinus radiata RepID=O64402_PINRA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Endo-1,4-beta-glucanase 8.595e-34
Internal
sp_v3.0_unigene162986 SustainPine v3.0 413
• AutoFact: 5-hydroxyisourate hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7T3Z8_VITVI 2.0e-30
• FL-Next: sp=Uric acid degradation bifunctional protein TTL; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Transthyretin 8.423e-20
Internal
sp_v3.0_unigene163008 SustainPine v3.0 365
• AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Picea abies RepID=B3U1V1_PICAB 1.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
C-terminus
sp_v3.0_unigene163027 SustainPine v3.0 258
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative 2.586e-12
Internal
sp_v3.0_unigene163249 SustainPine v3.0 364
• AutoFact: basic helix-loop-helix (bHLH) family protein 9.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: BHLH transcription factor 1.049e-09
Internal
sp_v3.0_unigene163262 SustainPine v3.0 395
• AutoFact: Sulfate transporter like protein n=4 Tax=Brassicaceae RepID=Q0WP36_ARATH 1.0e-29
• FL-Next: Isoform 2 of Molybdate transporter 2 OS=Arabidopsis thaliana GN=MOT2 0.0
• Sma3: Putative sulfate transporter 2.316e-14
C-terminus
sp_v3.0_unigene163333 SustainPine v3.0 241
• AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleosome/chromatin assembly factor group 6.675e-10
Internal
sp_v3.0_unigene163344 SustainPine v3.0 249
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070 gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07259.1| pentatricopeptide repe 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 7.943e-21
C-terminus
sp_v3.0_unigene163388 SustainPine v3.0 264
• AutoFact: Beta-galactosidase n=1 Tax=Lupinus angustifolius RepID=Q9ZP17_LUPAN 2.0e-14
• FL-Next: sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-galactosidase 0.0
N-terminus
sp_v3.0_unigene163422 SustainPine v3.0 197
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative, expressed 1.353e-06
Internal
sp_v3.0_unigene163483 SustainPine v3.0 335
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SRF1_RICCO 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 1.159e-28
Internal
sp_v3.0_unigene163686 SustainPine v3.0 141
• AutoFact: Nucleosome/chromatin assembly factor group n=7 Tax=core eudicotyledons RepID=A9PHH9_POPTR 1.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WD-40 repeat-containing protein MSI1 4.755e-09
Internal
sp_v3.0_unigene163705 SustainPine v3.0 390
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Tetratricopeptide-like helical 7.05e-12
C-terminus
sp_v3.0_unigene163734 SustainPine v3.0 168
• AutoFact: Cleavage stimulation factor 50 kDa subunit, putative n=1 Tax=Ricinus communis RepID=B9RLL1_RICCO 7.0e-20
• FL-Next: tr=Cleavage stimulation factor 50 kDa subunit, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Putative cleavage stimulation factor subunit 1 4.061e-09
Internal
sp_v3.0_unigene163876 SustainPine v3.0 317
• AutoFact: Beta-galactosidase n=1 Tax=Picea sitchensis RepID=A9NUR2_PICSI 3.0e-31
• FL-Next: sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-galactosidase 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain