Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene3935 SustainPine v3.0 4389
AutoFact: Cellulose synthase n=1 Tax=Pinus radiata RepID=Q4VWW7_PINRA 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Sma3: Cellulose synthase 0.0
Complete
sp_v3.0_unigene4043 SustainPine v3.0 1749
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SAP3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene4075 SustainPine v3.0 1942
AutoFact: [R] COG2319 FOG: WD40 repeat 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 1.052e-13
C-terminus
sp_v3.0_unigene4112 SustainPine v3.0 2073
AutoFact: binding / protein binding / zinc ion binding 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Putative C-terminus
sp_v3.0_unigene4118 SustainPine v3.0 1238
AutoFact: Nucleosome/chromatin assembly factor group n=7 Tax=core eudicotyledons RepID=A9PHH9_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 2.433e-09
C-terminus
sp_v3.0_unigene4223 SustainPine v3.0 2320
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] gb|AAQ89634.1| At1g14020 [Arabidopsis thaliana] dbj|BAF01665.1| growth regulator like protein [Arabidopsis thaliana] dbj|BAF01818.1| growth regulator like protein [Arabidopsis thaliana] gb|AEE2909 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative auxin-independent growth promoter 2.786e-22
C-terminus
sp_v3.0_unigene4236 SustainPine v3.0 2347
AutoFact: Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3 [Arabidopsis thaliana] sp|Q84W55.2|IP5P4_ARATH RecName: Full=Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3; AltName: Full=Protein FRAGILE FIBER 3 gb|AAV87313.1| type II inositol polyphospha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Type II inositol 5-phosphatase, putative 1.032e-08
Putative Complete
sp_v3.0_unigene4400 SustainPine v3.0 455
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T1H2_RICCO 7.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 3.952e-15
Internal
sp_v3.0_unigene4497 SustainPine v3.0 1469
AutoFact: Unassigned protein
FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
Putative Complete
sp_v3.0_unigene4499 SustainPine v3.0 1378
AutoFact: Phosphorylase-like protein protein [Arabidopsis thaliana] gb|AEE85565.1| Phosphorylase-like protein protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene4566 SustainPine v3.0 725
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|ABH04482.1| At2g16405 [Arabidopsis thaliana] gb|AEC06494.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene4612 SustainPine v3.0 344
AutoFact: Unassigned protein
FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
Internal
sp_v3.0_unigene4618 SustainPine v3.0 252
AutoFact: LisH domain containing protein 1.0e-06
FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Transcriptional corepressor LEUNIG 6.301e-12
N-terminus
sp_v3.0_unigene4623 SustainPine v3.0 396
AutoFact: Unassigned protein
FL-Next: sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene5205 SustainPine v3.0 862
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAE44475.1| WD repeat protein [Arabidopsis thaliana] gb|AEE85686.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 7.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene5309 SustainPine v3.0 1658
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AEE79079.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein At2g37160 4.622e-09
C-terminus
sp_v3.0_unigene5315 SustainPine v3.0 2262
AutoFact: transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] gb|AAC63653.1| unknown protein [Arabidopsis thaliana] gb|AAM15129.1| unknown protein [Arabidopsis thaliana] gb|AEC10921.1| transducin family protein / WD-40 repeat family prote 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene5331 SustainPine v3.0 2429
AutoFact: actin-related protein C1B [Arabidopsis thaliana] gb|AAL27513.1|AF439845_1 At2g31300/F16D14.14 [Arabidopsis thaliana] gb|AAD20675.1| putative ARP2/3 protein complex subunit p41 [Arabidopsis thaliana] gb|AAN18136.1| At2g31300/F16D14.14 [Arabidopsis thaliana 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene5396 SustainPine v3.0 3459
AutoFact: Katanin p80 WD40 repeat-containing subunit B1-1 [Arabidopsis thaliana] sp|Q8H0T9.3|KTNB1_ARATH RecName: Full=Katanin p80 WD40 repeat-containing subunit B1 homolog 1 gb|AAN72064.1| putative protein [Arabidopsis thaliana] gb|AED93166.1| Katanin p80 WD40 rep 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Katanin P80 subunit, putative 5.451e-09
Complete
sp_v3.0_unigene5403 SustainPine v3.0 1578
AutoFact: Prp8 binding protein [Arabidopsis thaliana] gb|AAB64029.1| putative splicing factor [Arabidopsis thaliana] gb|AAM13181.1| putative splicing factor [Arabidopsis thaliana] gb|AAP68267.1| At2g43770 [Arabidopsis thaliana] gb|AEC10322.1| Prp8 binding protein [ 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Chromosome chr5 scaffold_72, whole genome shotgun sequence 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain