Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Histone-fold

Term: IPR009072  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene60460 SustainPine v3.0 317
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 5.0e-25
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 6.715e-19
N-terminus
sp_v3.0_unigene60587 SustainPine v3.0 273
AutoFact: Histone H3 n=1 Tax=Taeniopygia guttata RepID=B5G4P8_TAEGU 5.0e-22
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene63028 SustainPine v3.0 156
AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ricinus communis RepID=B9SWA7_RICCO 4.0e-20
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase 4.43e-24
Internal
sp_v3.0_unigene65434 SustainPine v3.0 170
AutoFact: Histone H2B protein (Fragment) n=1 Tax=Pinus pinaster RepID=Q8VX93_PINPS 4.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.258e-32
Internal
sp_v3.0_unigene66190 SustainPine v3.0 192
AutoFact: Unassigned protein
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene66377 SustainPine v3.0 424
AutoFact: Transcription initiation factor TFIID subunit A [Arabidopsis thaliana] ref|NP_849680.1| Transcription initiation factor TFIID subunit A [Arabidopsis thaliana] gb|AAL07223.1| unknown protein [Arabidopsis thaliana] gb|AAM14362.1| unknown protein [Arabidopsi 2.0e-08
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene66673 SustainPine v3.0 149
AutoFact: transcription initiation factor TFIID subunit D7 [Arabidopsis thaliana] gb|AAD25788.1|AC006577_24 Similar to gb|U21858 transcription initiation factor TFIID 31KD subunit (TAFII32) from Homo sapiens [Arabidopsis thaliana] gb|AAF65406.1|AF238327_1 putative 8.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene66710 SustainPine v3.0 396
AutoFact: histone H4 [Hyacinthus orientalis] 3.0e-39
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene66731 SustainPine v3.0 399
AutoFact: Histone H2A n=1 Tax=Oryza sativa Japonica Group RepID=B9GDH1_ORYSJ 4.0e-09
FL-Next: sp=Histone H2A; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2A 0.0
Putative N-terminus
sp_v3.0_unigene66906 SustainPine v3.0 157
AutoFact: PREDICTED: histone H4-like n=1 Tax=Pan troglodytes RepID=UPI00020E3732 3.0e-16
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 3.119e-09
Putative N-terminus
sp_v3.0_unigene67064 SustainPine v3.0 278
AutoFact: Histone H3 n=3 Tax=Eukaryota RepID=B6SJQ5_MAIZE 8.0e-11
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene67246 SustainPine v3.0 436
AutoFact: transcription initiation factor TFIID subunit D5 [Arabidopsis thaliana] ref|NP_849592.1| transcription initiation factor TFIID subunit D5 [Arabidopsis thaliana] ref|NP_001030969.1| transcription initiation factor TFIID subunit D5 [Arabidopsis thaliana] gb 1.0e-11
FL-Next: tr=Transcription initiation factor TFIID subunit; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
N-terminus
sp_v3.0_unigene67293 SustainPine v3.0 289
AutoFact: Histone H2A n=1 Tax=Sorghum bicolor RepID=C5YYL4_SORBI 1.0e-13
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative N-terminus
sp_v3.0_unigene67553 SustainPine v3.0 247
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 3.0e-18
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 1.96182e-44
C-terminus
sp_v3.0_unigene67828 SustainPine v3.0 262
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 8.0e-12
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene68501 SustainPine v3.0 285
AutoFact: Histone H2B protein (Fragment) n=1 Tax=Pinus pinaster RepID=Q8VX93_PINPS 4.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 2.432e-38
Putative N-terminus
sp_v3.0_unigene68846 SustainPine v3.0 302
AutoFact: Histone H2B (Fragment) n=1 Tax=Asparagus officinalis RepID=Q43724_ASPOF 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.877e-36
C-terminus
sp_v3.0_unigene68992 SustainPine v3.0 256
AutoFact: Histone H2B.5 n=3 Tax=Magnoliophyta RepID=H2B5_WHEAT 6.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 6.727e-28
N-terminus
sp_v3.0_unigene69106 SustainPine v3.0 225
AutoFact: Histone H2A n=2 Tax=rosids RepID=E3NYV0_9FABA 1.0e-07
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene69154 SustainPine v3.0 243
AutoFact: Histone H3 n=1 Tax=Oryza sativa Japonica Group RepID=C7J3T3_ORYSJ 5.0e-21
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 5.75e-19
N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain