Sustainpine_db
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Assembly Name: SustainPine v3.0

Term: IPR019782  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene20781 SustainPine v3.0 905
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAL67015.1| putative DNA binding protein ACBF [Arabidopsis thaliana] gb|AAM45052.1| putative DNA binding protein ACBF [Arabidopsis thaliana] gb|AED92689.1| RNA recognition motif-containing 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear acid binding protein, putative 9.266e-23
Putative N-terminus
sp_v3.0_unigene20893 SustainPine v3.0 1070
AutoFact: WD-repeat protein, putative 6.0e-34
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Os03g0254700 protein 7.797e-06
Internal
sp_v3.0_unigene20958 SustainPine v3.0 546
AutoFact: Unassigned protein
FL-Next: sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene20973 SustainPine v3.0 827
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AED92690.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 1.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear acid binding protein, putative 6.993e-23
C-terminus
sp_v3.0_unigene21316 SustainPine v3.0 972
AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene21329 SustainPine v3.0 402
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 2.0e-18
FL-Next: sp=Topless-related protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: WD-40 repeat protein-like 5.637e-07
Internal
sp_v3.0_unigene21450 SustainPine v3.0 809
AutoFact: Unassigned protein
FL-Next: sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene21644 SustainPine v3.0 555
AutoFact: Unassigned protein
FL-Next: sp=Topless-related protein 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene21656 SustainPine v3.0 291
AutoFact: putative WD-repeat protein [Arabidopsis thaliana] 2.0e-06
FL-Next: sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene21772 SustainPine v3.0 493
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAB51411.1| putative protein [Arabidopsis thaliana] emb|CAB81228.1| putative protein [Arabidopsis thaliana] gb|AEE82991.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene21838 SustainPine v3.0 1609
AutoFact: anaphase promoting complex subunit 4 [Arabidopsis thaliana] 0.0
FL-Next: sp=Anaphase-promoting complex subunit 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene21868 SustainPine v3.0 568
AutoFact: Eukaryotic translation initiation factor 5A-1 n=3 Tax=Schizosaccharomyces pombe RepID=IF5A1_SCHPO 5.99756e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Eukaryotic translation initiation factor 5A 5.911e-28
Complete
sp_v3.0_unigene21912 SustainPine v3.0 749
AutoFact: Actin binding protein n=1 Tax=Dictyostelium purpureum RepID=F0ZVC2_DICPU 0.0
FL-Next: tr=Putative uncharacterized protein; Ectocarpus siliculosus (Brown alga). 0.0
C-terminus
sp_v3.0_unigene22016 SustainPine v3.0 874
AutoFact: PREDICTED: similar to wd-repeat protein [Nasonia vitripennis] 4.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene22262 SustainPine v3.0 358
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAF97963.1|AC000103_13 F21J9.19 [Arabidopsis thaliana] gb|AAK76647.1| unknown protein [Arabidopsis thaliana] gb|AAL85055.1| unknown protein [Arabidopsis thaliana] gb|AEE30544.1| transduc 3.0e-17
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: F-box and wd40 domain protein, putative 1.362e-10
Internal
sp_v3.0_unigene22431 SustainPine v3.0 2096
AutoFact: NLE multi-domain protein 3.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr13 scaffold_45, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene22526 SustainPine v3.0 1624
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 8.705e-12
Complete
sp_v3.0_unigene22932 SustainPine v3.0 1851
AutoFact: WD-40 repeat-containing protein MSI1 n=8 Tax=core eudicotyledons RepID=MSI1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 2.48e-09
Complete
sp_v3.0_unigene23536 SustainPine v3.0 1413
AutoFact: enhancer of mRNA-decapping protein 4 [Arabidopsis thaliana] gb|AEE75331.1| enhancer of mRNA-decapping protein 4 [Arabidopsis thaliana] 0.0
FL-Next: Isoform 2 of Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana GN=VCS 0.0
C-terminus
sp_v3.0_unigene23561 SustainPine v3.0 708
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SED3_RICCO 8.0e-08
FL-Next: sp=Tryptophan aminotransferase-related protein 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain