Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA polymerase II-binding domain

Term: IPR006903  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene5618 SustainPine v2.0 1387
AutoFact: DUF618 multi-domain protein 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: enth vhs family protein 0.0
Internal
sp_v2.0_unigene6116 SustainPine v2.0 786
AutoFact: DUF618 domain containing protein 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: regulation of nuclear pre-mrna domain-containing protein 2-like 0.0
N-terminus
sp_v2.0_unigene6494 SustainPine v2.0 2994
AutoFact: contains similarity to human PCF11p homolog (GB:AF046935) [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
Putative C-terminus
sp_v2.0_unigene14744 SustainPine v2.0 2599
AutoFact: PCF11P-similar protein 4 [Arabidopsis thaliana] dbj|BAF00997.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82437.1| PCF11P-similar protein 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene19697 SustainPine v2.0 168
AutoFact: Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana] gb|AAD31171.1| putative transcription factor [Arabidopsis thaliana] dbj|BAB11170.1| transcription factor-like protein [Arabidopsis thaliana] dbj|BAH30593.1| hypothetical protein [Arabidopsis 4.0e-17
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: tudor pwwp mbt domain-containing protein 2.18558e-22
Internal
sp_v2.0_unigene19837 SustainPine v2.0 954
AutoFact: Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana] gb|AAD31171.1| putative transcription factor [Arabidopsis thaliana] dbj|BAB11170.1| transcription factor-like protein [Arabidopsis thaliana] dbj|BAH30593.1| hypothetical protein [Arabidopsis 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: tudor pwwp mbt domain-containing protein 6.71891e-32
N-terminus
sp_v2.0_unigene21206 SustainPine v2.0 2243
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: swap surp domain-containing protein 0.0
C-terminus
sp_v2.0_unigene21279 SustainPine v2.0 861
AutoFact: Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana] gb|AAD31171.1| putative transcription factor [Arabidopsis thaliana] dbj|BAB11170.1| transcription factor-like protein [Arabidopsis thaliana] dbj|BAH30593.1| hypothetical protein [Arabidopsis 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: tudor pwwp mbt domain-containing protein 0.0
Internal
sp_v2.0_unigene43719 SustainPine v2.0 619
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 2.0e-29
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: 20-like protein 4.23164e-33
Internal
sp_v2.0_unigene55753 SustainPine v2.0 424
AutoFact: T4B21.1 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZS85_ARATH 2.0e-12
FL-Next: tr=Putative uncharacterized protein At4g04885; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pcf11p-similar protein 4 5.90206e-14
Putative N-terminus
sp_v2.0_unigene56938 SustainPine v2.0 357
AutoFact: putative pre-mRNA cleavage complex II protein Pcf11 [Oryza sativa Japonica Group] dbj|BAD46240.1| putative KIAA protein [Oryza sativa Japonica Group] 4.0e-37
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pre-mrna cleavage complex 2 protein pcf11 1.4013e-45
Internal
sp_v2.0_unigene58931 SustainPine v2.0 751
AutoFact: Glutathione peroxidase n=1 Tax=Ricinus communis RepID=B9T4A6_RICCO 5.99756e-43
FL-Next: sp=Glutathione peroxidase; Ricinus communis (Castor bean). 0.0
Blast2go: tudor pwwp mbt domain-containing protein 0.0
Internal
sp_v2.0_unigene63239 SustainPine v2.0 447
AutoFact: Glutathione peroxidase n=1 Tax=Ricinus communis RepID=B9T4A6_RICCO 1.0e-36
FL-Next: sp=Glutathione peroxidase; Ricinus communis (Castor bean). 0.0
Blast2go: tudor pwwp mbt domain-containing protein 9.02857e-42
N-terminus
sp_v2.0_unigene68208 SustainPine v2.0 387
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: swap surp domain-containing protein 2.69929e-11
Internal
sp_v2.0_unigene79677 SustainPine v2.0 578
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 7.0e-30
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: swap surp domain-containing protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain