Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Zinc finger, U1-C type

Term: IPR013085  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene5914 SustainPine v2.0 1719
AutoFact: PREDICTED: similar to putative C-type U1 snRNP n=1 Tax=Vitis vinifera RepID=UPI00019837D4 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 0.0
Complete
sp_v2.0_unigene17817 SustainPine v2.0 873
AutoFact: zinc finger, matrin type 5 [Danio rerio] 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding zinc ion binding protein 0.0
Complete
sp_v2.0_unigene23116 SustainPine v2.0 1469
AutoFact: PREDICTED: similar to putative C-type U1 snRNP n=1 Tax=Vitis vinifera RepID=UPI00019837D4 1.99965e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: c-type u1 snrnp 0.0
Complete
sp_v2.0_unigene25010 SustainPine v2.0 1003
AutoFact: Nucleic acid binding protein n=3 Tax=Andropogoneae RepID=B6U4V4_MAIZE 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding protein 0.0
N-terminus
sp_v2.0_unigene36205 SustainPine v2.0 692
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 2.99312e-28
C-terminus
sp_v2.0_unigene64401 SustainPine v2.0 601
AutoFact: PREDICTED: zinc finger matrin-type protein 5 isoform 4 [Pan troglodytes] ref|XP_515063.2| PREDICTED: zinc finger matrin-type protein 5 isoform 5 [Pan troglodytes] ref|XP_001136635.2| PREDICTED: zinc finger matrin-type protein 5 isoform 1 [Pan troglodytes] 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding zinc ion binding protein 8.68805e-44
Complete
sp_v2.0_unigene80485 SustainPine v2.0 460
AutoFact: PREDICTED: similar to putative C-type U1 snRNP n=1 Tax=Vitis vinifera RepID=UPI00019837D4 7.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain