Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA-dependent RNA polymerase, eukaryotic-type

Term: IPR007855  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene923 SustainPine v2.0 913
• AutoFact: RNA-directed RNA Polymerase (Fragment) n=1 Tax=Vigna unguiculata RepID=Q75ZN6_VIGUN 6.0e-26
• FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna-dependent rna polymerase 2.78958e-38
C-terminus
sp_v2.0_unigene2182 SustainPine v2.0 1507
• AutoFact: RNA-dependent RNA polymerase, putative n=1 Tax=Ricinus communis RepID=B9RP51_RICCO 0.0
• FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus
sp_v2.0_unigene3152 SustainPine v2.0 1517
• AutoFact: golgin candidate 1 [Arabidopsis thaliana] sp|Q8S8N9.2|GOGC1_ARATH RecName: Full=Golgin candidate 1; Short=AtGC1; AltName: Full=Golgin-84 gb|AAS49041.1| At2g19950 [Arabidopsis thaliana] dbj|BAF01318.1| hypothetical protein [Arabidopsis thaliana] gb|AEC0694 0.0
• FL-Next: sp=Golgin candidate 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: golgin candidate 1 0.0
C-terminus
sp_v2.0_unigene3292 SustainPine v2.0 1211
• AutoFact: RNA-directed RNA polymerase, putative n=1 Tax=Solanum demissum RepID=Q6L3W8_SOLDE 0.0
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 0.0
C-terminus
sp_v2.0_unigene5016 SustainPine v2.0 1412
• AutoFact: putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] 0.0
• FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna-dependent rna polymerase 6 0.0
Internal
sp_v2.0_unigene5300 SustainPine v2.0 750
• AutoFact: RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana] sp|O82188.2|RDR5_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 5; Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase 5 gb|AEC06944.1| RNA-dependent RNA polymerase-like prot 1.0e-32
• FL-Next: sp=Probable RNA-dependent RNA polymerase 4; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna-dependent rna polymerase family protein 0.0
Internal
sp_v2.0_unigene6460 SustainPine v2.0 398
• AutoFact: RNA-dependent RNA polymerase n=2 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI 3.0e-39
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 4.2039e-45
Internal
sp_v2.0_unigene7282 SustainPine v2.0 556
• AutoFact: RNA-directed RNA polymerase-like, putative n=3 Tax=Solanum demissum RepID=Q6L447_SOLDE 1.0e-30
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 1.67319e-34
C-terminus
sp_v2.0_unigene10111 SustainPine v2.0 1070
• AutoFact: RNA-dependent RNA polymerase 6 n=2 Tax=Arabidopsis RepID=RDR6_ARATH 0.0
• FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus
sp_v2.0_unigene11869 SustainPine v2.0 856
• AutoFact: RNA-dependent RNA polymerase 6 n=1 Tax=Cucumis sativus RepID=E9NWL0_CUCSA 2.0e-38
• FL-Next: sp=Probable RNA-dependent RNA polymerase SHL2; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna-dependent rna polymerase 6 7.77721e-43
Putative N-terminus
sp_v2.0_unigene13987 SustainPine v2.0 936
• AutoFact: RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana] sp|O82190.2|RDR3_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase 3 gb|AEC06942.1| RNA-dependent RNA polymerase-like prot 0.0
• FL-Next: sp=Probable RNA-dependent RNA polymerase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase family protein 0.0
Internal
sp_v2.0_unigene28213 SustainPine v2.0 1775
• AutoFact: Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IKW9_POPTR 0.0
• FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus
sp_v2.0_unigene28836 SustainPine v2.0 403
• AutoFact: RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida RepID=Q9ZRX3_PETHY 3.0e-39
• FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna-directed rna polymerase 2.8026e-45
Internal
sp_v2.0_unigene30068 SustainPine v2.0 894
• AutoFact: RNA-dependent RNA polymerase n=2 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI 0.0
• FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna-dependent rna polymerase 0.0
Internal
sp_v2.0_unigene38254 SustainPine v2.0 493
• AutoFact: RNA-dependent RNA polymerase n=3 Tax=Nicotiana RepID=C1I213_NICGU 0.0
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 0.0
Internal
sp_v2.0_unigene40115 SustainPine v2.0 327
• AutoFact: RNA-directed RNA polymerase [Petunia x hybrida] 3.0e-30
• FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna-dependent rna polymerase 5.91655e-32
Internal
sp_v2.0_unigene42569 SustainPine v2.0 517
• AutoFact: RNA-dependent RNA polymerase n=2 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI 2.0e-35
• FL-Next: sp=RNA-dependent RNA polymerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 1 5.96813e-42
Internal
sp_v2.0_unigene46856 SustainPine v2.0 266
• AutoFact: RNA-directed RNA polymerase n=6 Tax=Solanum RepID=Q9ZR58_SOLLC 6.0e-25
• FL-Next: sp=RNA-dependent RNA polymerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna-polymerase 2.35105e-29
Internal
sp_v2.0_unigene86371 SustainPine v2.0 1151
• AutoFact: Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IKW9_POPTR 0.0
• FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain