Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: S15/NS1, RNA-binding

Term: IPR009068  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene424 SustainPine v2.0 1630
• AutoFact: putative RNA helicase [Oryza sativa Japonica Group] dbj|BAD35820.1| putative RNA helicase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: deah-box nuclear pre-mrna splicing factor 0.0
N-terminus
sp_v2.0_unigene18376 SustainPine v2.0 775
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: ribosomal protein s15 family protein 3.47947e-20
Internal
sp_v2.0_unigene21817 SustainPine v2.0 520
• AutoFact: Unassigned protein
• FL-Next: tr=Disease resistance protein; pekinensis). 0.0
• Blast2go: disease resistance protein 7.31522e-29
Internal
sp_v2.0_unigene21914 SustainPine v2.0 1976
• AutoFact: S15/NS1, RNA-binding protein [Arabidopsis thaliana] gb|AAF82151.1|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi|6730725 from Arabidopsis thaliana BAC T21F11 gb|AC018849 and contains a Ribosomal Protein S15 PF|00312 domain gb|AAK32782.1 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: s15 rna-binding protein 0.0
Complete
sp_v2.0_unigene24375 SustainPine v2.0 1594
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 0.0
Complete
sp_v2.0_unigene33994 SustainPine v2.0 912
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: retrotransposon protein 0.0
Internal
sp_v2.0_unigene41370 SustainPine v2.0 301
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: retrotransposon unclassified 3.01564e-32
Complete
sp_v2.0_unigene43790 SustainPine v2.0 276
• AutoFact: polyprotein [Glycine max] 1.0e-22
• FL-Next: tr=Disease resistance protein; pekinensis). 0.0
• Blast2go: retrotransposon unclassified 7.5145e-27
Internal
sp_v2.0_unigene51389 SustainPine v2.0 388
• AutoFact: pol protein [Picea abies] 3.0e-29
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: pol protein 4.3726e-37
Internal
sp_v2.0_unigene52449 SustainPine v2.0 268
• AutoFact: Pol protein (Fragment) n=2 Tax=Picea abies RepID=Q9M6P0_PICAB 5.0e-16
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: pol protein 8.61406e-21
Internal
sp_v2.0_unigene55950 SustainPine v2.0 261
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 2.0e-21
• FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
• Blast2go: retrotransposon unclassified 6.74239e-26
Internal
sp_v2.0_unigene76255 SustainPine v2.0 218
• AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Pinus brutia RepID=Q9M6N4_9CONI 2.0e-30
• FL-Next: tr=RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
• Blast2go: pol protein integrase region 2.85279e-40
Internal
sp_v2.0_unigene81074 SustainPine v2.0 354
• AutoFact: 40S ribosomal protein S13, putative n=1 Tax=Solanum demissum RepID=Q6L4B2_SOLDE 1.00053e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s13 0.0
N-terminus
sp_v2.0_unigene81922 SustainPine v2.0 586
• AutoFact: 40S ribosomal protein S13, putative n=1 Tax=Ricinus communis RepID=B9R9P3_RICCO 1.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein 2.24516e-34
N-terminus
sp_v2.0_unigene81945 SustainPine v2.0 184
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q56GG4_CYCRE 7.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: reverse transcriptase 1.25143e-30
C-terminus
sp_v2.0_unigene82728 SustainPine v2.0 393
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 5.00264e-43
• FL-Next: tr=Polyprotein; Glycine max (Soybean) (Glycine hispida). 0.0
• Blast2go: pol protein integrase region 0.0
Internal
sp_v2.0_unigene83376 SustainPine v2.0 731
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: pol protein integrase region 0.0
Internal
sp_v2.0_unigene83477 SustainPine v2.0 416
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 1.0e-34
• FL-Next: tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: pol protein integrase region 1.04593e-34
Internal
sp_v2.0_unigene83603 SustainPine v2.0 596
• AutoFact: Pol protein integrase region (Fragment) n=6 Tax=Spermatophyta RepID=Q9M6N3_9CONI 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: pol protein integrase region 0.0
Internal
sp_v2.0_unigene85835 SustainPine v2.0 575
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 2.0e-28
• FL-Next: tr=Putative uncharacterized protein; Lotus japonicus. 0.0
• Blast2go: ac051624_3 retroelement 8.81551e-35
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain