Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: tRNA-dihydrouridine synthase

Term: IPR001269  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene2273 SustainPine v2.0 814
AutoFact: tRNA-dihydrouridine synthase 3-like n=3 Tax=Arabidopsis RepID=DUS3L_ARATH 0.0
FL-Next: sp=tRNA-dihydrouridine synthase 3-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: trna-dihydrouridine synthase 3-like protein 0.0
C-terminus
sp_v2.0_unigene4485 SustainPine v2.0 1037
AutoFact: tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana] dbj|BAB10956.1| unnamed protein product [Arabidopsis thaliana] gb|AAK83641.1| AT5g67220/K21H1_18 [Arabidopsis thaliana] gb|AAM26724.1| AT5g67220/K21H1_18 [Arabidopsis thaliana] gb|AED98315.1| tRNA-dihy 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
Putative C-terminus
sp_v2.0_unigene5540 SustainPine v2.0 814
AutoFact: tRNA-dihydrouridine synthase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SVS8_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: trna-dihydrouridine synthase 1-like 0.0
N-terminus
sp_v2.0_unigene9132 SustainPine v2.0 722
AutoFact: tRNA-dihydrouridine synthase n=1 Tax=Ricinus communis RepID=B9SSD6_RICCO 0.0
FL-Next: sp=tRNA-dihydrouridine synthase 3-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: trna-dihydrouridine synthase 2 0.0
Internal
sp_v2.0_unigene10484 SustainPine v2.0 1500
AutoFact: RecName: Full=tRNA-dihydrouridine synthase 3-like; AltName: Full=Zinc finger CCCH domain-containing protein 50; Short=AtC3H50 emb|CAB38623.1| putative protein [Arabidopsis thaliana] emb|CAB80552.1| putative protein [Arabidopsis thaliana] 0.0
FL-Next: sp=tRNA-dihydrouridine synthase 3-like; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: trna-dihydrouridine synthase 3-like 0.0
Internal
sp_v2.0_unigene20777 SustainPine v2.0 897
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
C-terminus
sp_v2.0_unigene32963 SustainPine v2.0 524
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 7.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 1.56664e-37
Putative C-terminus
sp_v2.0_unigene38675 SustainPine v2.0 573
AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
sp_v2.0_unigene41200 SustainPine v2.0 499
AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 9.80909e-45
Internal
sp_v2.0_unigene42414 SustainPine v2.0 560
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 2.18061e-35
Putative C-terminus
sp_v2.0_unigene46215 SustainPine v2.0 541
AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE9_ARATH 2.8026e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Internal
sp_v2.0_unigene46894 SustainPine v2.0 358
AutoFact: tRNA-dihydrouridine synthase [Aedes aegypti] gb|EAT35713.1| tRNA-dihydrouridine synthase [Aedes aegypti] 6.0e-06
FL-Next: tr=FAD binding protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: fad binding protein 8.08507e-10
Internal
sp_v2.0_unigene55473 SustainPine v2.0 222
AutoFact: [J] COG0042 tRNA-dihydrouridine synthase 3.0e-09
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: trna-dihydrouridine synthase a 3.32305e-28
Internal
sp_v2.0_unigene55850 SustainPine v2.0 505
AutoFact: tRNA-dihydrouridine synthase A [Arabidopsis thaliana] ref|NP_001078731.1| tRNA-dihydrouridine synthase A [Arabidopsis thaliana] dbj|BAB11061.1| unnamed protein product [Arabidopsis thaliana] gb|AAL59916.1| unknown protein [Arabidopsis thaliana] gb|AAM2022 3.0e-20
FL-Next: sp=tRNA-dihydrouridine synthase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: trna-dihydrouridine synthase a 3.96595e-24
Putative C-terminus
sp_v2.0_unigene57365 SustainPine v2.0 371
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: copia-type polyprotein 1.41969e-34
Putative C-terminus
sp_v2.0_unigene60709 SustainPine v2.0 862
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: retrotransposon unclassified 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain