Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Zinc finger, U1-type

Term: IPR003604  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene4567 SustainPine v2.0 988
AutoFact: U4/U6.U5 tri-snRNP component [Arabidopsis thaliana] gb|AAK62582.1| AT3g05760/F10A16_5 [Arabidopsis thaliana] gb|AAK96449.1| AT3g05760/F10A16_5 [Arabidopsis thaliana] gb|AEE74293.1| U4/U6.U5 tri-snRNP component [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: u4 tri-snrnp component 0.0
N-terminus
sp_v2.0_unigene5914 SustainPine v2.0 1719
AutoFact: PREDICTED: similar to putative C-type U1 snRNP n=1 Tax=Vitis vinifera RepID=UPI00019837D4 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 0.0
Complete
sp_v2.0_unigene7759 SustainPine v2.0 431
AutoFact: DNAJ heat shock N-terminal domain-containing protein n=2 Tax=Arabidopsis RepID=Q9C911_ARATH 3.0e-12
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: dnaj homolog subfamily c member 21-like 4.58468e-16
Internal
sp_v2.0_unigene10522 SustainPine v2.0 588
AutoFact: Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] emb|CAB71880.1| putative protein [Arabidopsis thaliana] gb|AEE80322.1| Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene10948 SustainPine v2.0 1019
AutoFact: C2H2-type zinc finger-containing protein [Arabidopsis thaliana] gb|AAK76505.1| unknown protein [Arabidopsis thaliana] gb|AAD31578.2| expressed protein [Arabidopsis thaliana] gb|AAM14308.1| unknown protein [Arabidopsis thaliana] gb|AEC09323.1| C2H2-type zi 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene12770 SustainPine v2.0 245
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RFQ6_RICCO 9.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 9.11609e-32
Internal
sp_v2.0_unigene16846 SustainPine v2.0 914
AutoFact: splicing factor 3A subunit 2 [Arabidopsis thaliana] gb|AAK96629.1| At2g32600/T26B15.16 [Arabidopsis thaliana] gb|AAC25942.2| putative spliceosome associated protein [Arabidopsis thaliana] gb|AAM19966.1| At2g32600/T26B15.16 [Arabidopsis thaliana] gb|AEC087 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3a subunit 2 0.0
N-terminus
sp_v2.0_unigene22422 SustainPine v2.0 562
AutoFact: PAT1 multi-domain protein 2.0e-15
Coding
sp_v2.0_unigene23116 SustainPine v2.0 1469
AutoFact: PREDICTED: similar to putative C-type U1 snRNP n=1 Tax=Vitis vinifera RepID=UPI00019837D4 1.99965e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: c-type u1 snrnp 0.0
Complete
sp_v2.0_unigene25010 SustainPine v2.0 1003
AutoFact: Nucleic acid binding protein n=3 Tax=Andropogoneae RepID=B6U4V4_MAIZE 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding protein 0.0
N-terminus
sp_v2.0_unigene35836 SustainPine v2.0 851
AutoFact: DNAJ heat shock N-terminal domain-containing protein n=2 Tax=Arabidopsis RepID=Q9C911_ARATH 2.0e-39
FL-Next: tr=Heat shock-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: dnaj homolog subfamily c member 21-like 1.80768e-43
Complete
sp_v2.0_unigene36205 SustainPine v2.0 692
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 2.99312e-28
C-terminus
sp_v2.0_unigene38437 SustainPine v2.0 321
AutoFact: YL1 multi-domain protein 4.0e-07
unknown
sp_v2.0_unigene39388 SustainPine v2.0 419
AutoFact: Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] emb|CAB71880.1| putative protein [Arabidopsis thaliana] gb|AEE80322.1| Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana] 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 3.39043e-30
Putative N-terminus
sp_v2.0_unigene64739 SustainPine v2.0 519
AutoFact: Splicing factor 3A subunit, putative n=1 Tax=Ricinus communis RepID=B9S0D2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3a subunit 2 0.0
Internal
sp_v2.0_unigene80485 SustainPine v2.0 460
AutoFact: PREDICTED: similar to putative C-type U1 snRNP n=1 Tax=Vitis vinifera RepID=UPI00019837D4 7.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain