Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v2.0

Name: Pumilio RNA-binding repeat

Term: IPR001313  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene317 SustainPine v2.0 2330
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene468 SustainPine v2.0 2772
AutoFact: Predicted protein n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SMX6_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene1159 SustainPine v2.0 1303
AutoFact: Unassigned protein
FL-Next: Isoform 2 of Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 0.0
Blast2go: pumilio 23 0.0
Internal
sp_v2.0_unigene1468 SustainPine v2.0 1400
AutoFact: protein pumilio 24 [Arabidopsis thaliana] sp|Q9LRZ3.1|PUM24_ARATH RecName: Full=Pumilio homolog 24; Short=APUM-24; Short=AtPUM24 dbj|BAA95774.1| unnamed protein product [Arabidopsis thaliana] gb|AAK73996.1| AT3g16810/K20I9_3 [Arabidopsis thaliana] gb|AEE7 0.0
FL-Next: sp=Pumilio homolog 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene2043 SustainPine v2.0 1985
AutoFact: DUF632 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
C-terminus
sp_v2.0_unigene2458 SustainPine v2.0 1998
AutoFact: Amino acid transporter family protein, putative n=3 Tax=Oryza sativa RepID=Q53MQ4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: amino acid transporter 0.0
Complete
sp_v2.0_unigene6169 SustainPine v2.0 1812
AutoFact: pumilio domain-containing protein PPD1 [Populus tremula x Populus tremuloides] 2.0e-38
FL-Next: Isoform 2 of Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 0.0
Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene8333 SustainPine v2.0 981
AutoFact: transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gb|AEC09638.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: amino acid transporter 0.0
Complete
sp_v2.0_unigene11057 SustainPine v2.0 2310
AutoFact: DUF632 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bzip transcription factor bzip133 0.0
C-terminus
sp_v2.0_unigene11128 SustainPine v2.0 911
AutoFact: pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 4.0e-05
FL-Next: sp=Pumilio homolog 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 1.71025e-33
N-terminus
sp_v2.0_unigene12290 SustainPine v2.0 939
AutoFact: Nucleic acid binding NABP [Medicago truncatula] 1.0e-10
FL-Next: sp=Pumilio homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pumilio homolog 2-like 4.159e-14
N-terminus
sp_v2.0_unigene13167 SustainPine v2.0 3322
AutoFact: Nucleic acid binding NABP [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pumilio homolog 2-like 0.0
Complete
sp_v2.0_unigene13505 SustainPine v2.0 1540
AutoFact: DUF659 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100247282 0.0
Putative Complete
sp_v2.0_unigene13711 SustainPine v2.0 1016
AutoFact: Unassigned protein
FL-Next: sp=Pumilio homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pumilio homolog 2-like 1.12651e-35
N-terminus
sp_v2.0_unigene14138 SustainPine v2.0 1854
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Putative Complete
sp_v2.0_unigene14481 SustainPine v2.0 624
AutoFact: Unassigned protein
FL-Next: sp=Pumilio homolog 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene15852 SustainPine v2.0 1362
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100806266 0.0
Putative Complete
sp_v2.0_unigene16154 SustainPine v2.0 719
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dna binding 0.0
Internal
sp_v2.0_unigene19161 SustainPine v2.0 407
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Putative pumilio homolog 8, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 0.0
Internal
sp_v2.0_unigene23854 SustainPine v2.0 1949
AutoFact: transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gb|AAK64155.1| unknown protein [Arabidopsis thaliana] gb|AAL85095.1| unknown protein [Arabidopsis thaliana] gb|AAD11993.2| expressed protein [Arabidopsis thaliana] gb|AEC09942.1| tra 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: vacuolar amino acid transporter 1-like 0.0
Complete

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain