Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v2.0

Name: Choline transporter-like

Term: IPR007603  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene1142 SustainPine v2.0 2845
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_14.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=E0CSM5_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: choline transporter-like protein 2-like 0.0
Complete
sp_v2.0_unigene2693 SustainPine v2.0 2173
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T395_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein pns1 0.0
Complete
sp_v2.0_unigene3238 SustainPine v2.0 2739
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_14.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=E0CSM5_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: choline transporter-like protein 2-like 0.0
Complete
sp_v2.0_unigene5159 SustainPine v2.0 1155
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T395_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein pns1 0.0
C-terminus
sp_v2.0_unigene8552 SustainPine v2.0 2673
AutoFact: Plasma-membrane choline transporter family protein [Arabidopsis thaliana] gb|AAL24390.1| putative protein [Arabidopsis thaliana] gb|AAM47987.1| putative protein [Arabidopsis thaliana] gb|AEE86957.1| Plasma-membrane choline transporter family protein [Arab 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene21680 SustainPine v2.0 1733
AutoFact: Protein PNS1, putative n=1 Tax=Ricinus communis RepID=B9ST27_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: plasma-membrane choline transporter-like protein 0.0
Putative C-terminus
sp_v2.0_unigene36405 SustainPine v2.0 370
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T979_VITVI 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: plasma-membrane choline transporter-like protein 5.81679e-36
Internal
sp_v2.0_unigene74496 SustainPine v2.0 386
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T395_VITVI 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein pns1 2.45295e-35
C-terminus
sp_v2.0_unigene76715 SustainPine v2.0 396
AutoFact: Plasma-membrane choline transporter family protein [Arabidopsis thaliana] gb|AED91938.1| Plasma-membrane choline transporter family protein [Arabidopsis thaliana] 3.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein pns1 3.44745e-15
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain