Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v2.0

Name: DNA topoisomerase, type IA, central region, subdomain 1

Term: IPR013824  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene2878 SustainPine v2.0 1486
AutoFact: DNA topoisomerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SU60_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: dna topoisomerase 0.0
Putative Complete
sp_v2.0_unigene25820 SustainPine v2.0 2303
AutoFact: E3 ubiquitin-protein ligase CIP8 [Arabidopsis thaliana] sp|Q9SPL2.1|CIP8_ARATH RecName: Full=E3 ubiquitin-protein ligase CIP8; AltName: Full=COP1-interacting protein 8 gb|AAD56636.1|AF162150_1 COP1-interacting protein CIP8 [Arabidopsis thaliana] dbj|BAA97 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger 2.45808e-31
Complete
sp_v2.0_unigene33259 SustainPine v2.0 653
AutoFact: DNA topoisomerase n=1 Tax=Ricinus communis RepID=B9RRL8_RICCO 0.0
FL-Next: sp=DNA topoisomerase; Vitis vinifera (Grape). 0.0
Blast2go: dna topoisomerase iii beta 0.0
Internal
sp_v2.0_unigene37616 SustainPine v2.0 354
AutoFact: DNA topoisomerase n=1 Tax=Ricinus communis RepID=B9SPT5_RICCO 1.0e-31
FL-Next: sp=DNA topoisomerase; Ricinus communis (Castor bean). 0.0
Blast2go: dna topoisomerase 1-like 2.88532e-31
Internal
sp_v2.0_unigene39671 SustainPine v2.0 340
AutoFact: DNA topoisomerase n=1 Tax=Ricinus communis RepID=B9RRL8_RICCO 2.0e-27
FL-Next: sp=DNA topoisomerase; Ricinus communis (Castor bean). 0.0
Blast2go: dna topoisomerase iii beta 0.0
Putative C-terminus
sp_v2.0_unigene47135 SustainPine v2.0 331
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 4.0e-29
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: uncharacterized protein loc100854181 7.72566e-34
Putative N-terminus
sp_v2.0_unigene48925 SustainPine v2.0 259
AutoFact: DNA topoisomerase, type IA, core n=1 Tax=Arabidopsis thaliana RepID=F4JRX3_ARATH 1.0e-17
FL-Next: sp=DNA topoisomerase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna topoisomerase 1-like 7.73178e-22
Internal
sp_v2.0_unigene53005 SustainPine v2.0 527
AutoFact: RVT_1 domain containing protein 8.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100259900 0.0
Putative Complete
sp_v2.0_unigene67228 SustainPine v2.0 340
AutoFact: DNA topoisomerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7U9K8_VITVI 9.0e-31
FL-Next: sp=DNA topoisomerase; Vitis vinifera (Grape). 0.0
Blast2go: dna topoisomerase 3-beta-1-like 1.45692e-32
Internal
sp_v2.0_unigene73036 SustainPine v2.0 307
AutoFact: DNA topoisomerase n=1 Tax=Sorghum bicolor RepID=C5WWW3_SORBI 3.0e-37
FL-Next: sp=DNA topoisomerase; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: dna topoisomerase iii 4.2039e-44
Internal
sp_v2.0_unigene84842 SustainPine v2.0 244
AutoFact: putative DNA topoisomerase III beta [Arabidopsis thaliana] 5.0e-30
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: dna topoisomerase iii beta 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain