Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA polymerase, N-terminal

Term: IPR006592  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene85 SustainPine v2.0 2193
AutoFact: zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] dbj|BAB11046.1| unnamed protein product [Arabidopsis thaliana] gb|AED96154.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 48 0.0
Complete
sp_v2.0_unigene3082 SustainPine v2.0 968
AutoFact: DNA-directed RNA polymerase n=1 Tax=Selaginella moellendorffii RepID=D8SDS6_SELML 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase i subunit rpa1-like 0.0
Internal
sp_v2.0_unigene5596 SustainPine v2.0 1578
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta''; Cathaya argyrophylla. Plastid; Chloroplast. 0.0
Blast2go: dna-directed rna polymerase iii subunit rpc1-like 0.0
Internal
sp_v2.0_unigene11779 SustainPine v2.0 682
AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase ii subunit rpb1-like 0.0
N-terminus
sp_v2.0_unigene11828 SustainPine v2.0 1653
AutoFact: DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI 0.0
FL-Next: sp=DNA-directed RNA polymerase; Pinus koraiensis (Korean pine). Plastid; Chloroplast. 0.0
Blast2go: rna polymerase ii largest subunit 0.0
Putative C-terminus
sp_v2.0_unigene19075 SustainPine v2.0 361
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TI03_VITVI 2.0e-39
FL-Next: sp=DNA-directed RNA polymerase; Pinus pinaster (Maritime pine). Plastid; Chloroplast. 0.0
Blast2go: dna-directed rna polymerase i subunit rpa1-like 1.4013e-45
Internal
sp_v2.0_unigene21188 SustainPine v2.0 398
AutoFact: DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii largest subunit 0.0
Internal
sp_v2.0_unigene22087 SustainPine v2.0 1659
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 3.9937e-43
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase 0.0
C-terminus
sp_v2.0_unigene24824 SustainPine v2.0 1237
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase ii subunit rpb1-like 0.0
Internal
sp_v2.0_unigene27088 SustainPine v2.0 466
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=Q2TUM9_9CONI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta'' 2; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). Plastid; Chloroplast. 0.0
Blast2go: rna polymerase iii large subunit 0.0
Internal
sp_v2.0_unigene27946 SustainPine v2.0 670
AutoFact: DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta'' 2; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). Plastid; Chloroplast. 0.0
Blast2go: rna polymerase ii largest subunit 0.0
Internal
sp_v2.0_unigene28343 SustainPine v2.0 4665
AutoFact: DNA-directed RNA polymerase n=37 Tax=Spermatophyta RepID=C5YGY9_SORBI 0.0
FL-Next: sp=DNA-directed RNA polymerase; Pinus koraiensis (Korean pine). Plastid; Chloroplast. 0.0
Putative C-terminus
sp_v2.0_unigene31847 SustainPine v2.0 434
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 3.0e-25
FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna 8.46086e-29
N-terminus
sp_v2.0_unigene38558 SustainPine v2.0 457
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9SL65_RICCO 2.0e-31
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase a large subunit 8.6964e-36
Internal
sp_v2.0_unigene38763 SustainPine v2.0 825
AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9SL65_RICCO 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase i subunit rpa1-like 0.0
Internal
sp_v2.0_unigene39785 SustainPine v2.0 496
AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9GM06_POPTR 2.0e-39
FL-Next: sp=DNA-directed RNA polymerase; Pinus monophylla. Plastid; Chloroplast. 0.0
Blast2go: rna polymerase iv subunit 5.60519e-45
Internal
sp_v2.0_unigene40128 SustainPine v2.0 355
AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=Q2TUM9_9CONI 3.0e-24
FL-Next: sp=DNA-directed RNA polymerase; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: rna polymerase iii large subunit 3.33949e-28
Internal
sp_v2.0_unigene41110 SustainPine v2.0 201
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 4.0e-14
FL-Next: sp=DNA-directed RNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 3.63798e-17
Internal
sp_v2.0_unigene47703 SustainPine v2.0 382
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 1.99993e-41
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Putative N-terminus
sp_v2.0_unigene51333 SustainPine v2.0 439
AutoFact: DNA-directed RNA polymerase subunit beta' n=71 Tax=Propionibacterium RepID=RPOC_PROAC 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta'' 2; Pinus lambertiana (Sugar pine). Plastid; Chloroplast. 0.0
Blast2go: dna-directed rna beta subunit 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain