Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: DNA mismatch repair protein MutS, N-terminal

Term: IPR016151  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene2209 SustainPine v2.0 1877
AutoFact: Potassium efflux antiporter n=4 Tax=rosids RepID=B9ICA8_POPTR 0.0
FL-Next: sp=K(+) efflux antiporter 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: k(+) efflux antiporter chloroplastic-like 0.0
C-terminus
sp_v2.0_unigene2800 SustainPine v2.0 1631
AutoFact: DNA mismatch repair protein MSH6-2, putative n=1 Tax=Ricinus communis RepID=B9RKT8_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein Msh6-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-2 0.0
C-terminus
sp_v2.0_unigene4980 SustainPine v2.0 1713
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 0.0
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 0.0
C-terminus
sp_v2.0_unigene11987 SustainPine v2.0 2699
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna mismatch repair protein msh6-1 0.0
Putative Complete
sp_v2.0_unigene17446 SustainPine v2.0 925
AutoFact: Unassigned protein
FL-Next: sp=DNA mismatch repair protein Msh6-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-2 3.60484e-16
Putative N-terminus
sp_v2.0_unigene26552 SustainPine v2.0 1371
AutoFact: DNA polymerase III subunit epsilon n=3 Tax=Zea mays RepID=B6TZF8_MAIZE 0.0
FL-Next: tr=DNA polymerase III subunit epsilon; Zea mays (Maize). 0.0
Blast2go: dna polymerase iii polc-type-like 0.0
Complete
sp_v2.0_unigene29190 SustainPine v2.0 829
AutoFact: PREDICTED: similar to KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter n=1 Tax=Vitis vinifera RepID=UPI0001984E30 0.0
FL-Next: sp=K(+) efflux antiporter 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: k(+) efflux antiporter chloroplastic-like 0.0
Internal
sp_v2.0_unigene32366 SustainPine v2.0 761
AutoFact: cleavage/polyadenylation specificity factor [Arabidopsis thaliana] dbj|BAC42701.1| unknown protein [Arabidopsis thaliana] gb|AAO63939.1| unknown protein [Arabidopsis thaliana] dbj|BAF00402.1| hypothetical protein [Arabidopsis thaliana] gb|AEE85076.1| clea 4.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cleavage and polyadenylation specificity factor 5 1.62096e-35
N-terminus
sp_v2.0_unigene37566 SustainPine v2.0 308
AutoFact: DNA mismatch repair protein n=1 Tax=Cucumis sativus RepID=B3U2A3_CUCSA 5.0e-24
FL-Next: tr=DNA mismatch repair protein; Cucumis sativus (Cucumber). 0.0
Blast2go: dna mismatch repair protein 5.17035e-28
Putative C-terminus
sp_v2.0_unigene40146 SustainPine v2.0 233
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNF5_RICCO 1.0e-16
FL-Next: sp=DNA mismatch repair protein Msh6-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-1 8.3216e-20
Internal
sp_v2.0_unigene40473 SustainPine v2.0 761
AutoFact: DNA mismatch repair protein MSH6-2, putative n=1 Tax=Ricinus communis RepID=B9RKT8_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein Msh6-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-2 0.0
Internal
sp_v2.0_unigene40553 SustainPine v2.0 307
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 3.0e-10
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 1.53451e-16
Internal
sp_v2.0_unigene41691 SustainPine v2.0 217
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 1.0e-24
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 4.33037e-34
Internal
sp_v2.0_unigene43935 SustainPine v2.0 440
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dna mismatch repair protein 9.2333e-32
Internal
sp_v2.0_unigene44416 SustainPine v2.0 234
AutoFact: MutS homolog 7 [Triticum aestivum] 4.0e-26
FL-Next: sp=DNA mismatch repair protein Msh6-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-2 2.07809e-36
Internal
sp_v2.0_unigene57036 SustainPine v2.0 641
AutoFact: DNA mismatch repair protein (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q1XBQ6_SOLLC 0.0
FL-Next: tr=ATP binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: dna mismatch repair protein 0.0
Internal
sp_v2.0_unigene58186 SustainPine v2.0 419
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SQS1_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein Msh6-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 0.0
Internal
sp_v2.0_unigene59204 SustainPine v2.0 435
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dna mismatch repair protein 0.0
Internal
sp_v2.0_unigene67677 SustainPine v2.0 318
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 5.0e-22
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh3-like 2.10135e-25
Internal
sp_v2.0_unigene74128 SustainPine v2.0 400
AutoFact: MutS homolog 7 [Triticum aestivum] 5.0e-20
FL-Next: sp=DNA mismatch repair protein Msh6-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-2 1.47484e-24
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain