Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: DNA mismatch repair protein MutS, C-terminal

Term: IPR000432  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene1894 SustainPine v2.0 3318
AutoFact: DNA mismatch repair protein MSH2, putative n=1 Tax=Ricinus communis RepID=B9RE38_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein Msh2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh2 0.0
Complete
sp_v2.0_unigene2209 SustainPine v2.0 1877
AutoFact: Potassium efflux antiporter n=4 Tax=rosids RepID=B9ICA8_POPTR 0.0
FL-Next: sp=K(+) efflux antiporter 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: k(+) efflux antiporter chloroplastic-like 0.0
C-terminus
sp_v2.0_unigene2800 SustainPine v2.0 1631
AutoFact: DNA mismatch repair protein MSH6-2, putative n=1 Tax=Ricinus communis RepID=B9RKT8_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein Msh6-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-2 0.0
C-terminus
sp_v2.0_unigene4980 SustainPine v2.0 1713
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 0.0
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 0.0
C-terminus
sp_v2.0_unigene11987 SustainPine v2.0 2699
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna mismatch repair protein msh6-1 0.0
Putative Complete
sp_v2.0_unigene17446 SustainPine v2.0 925
AutoFact: Unassigned protein
FL-Next: sp=DNA mismatch repair protein Msh6-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-2 3.60484e-16
Putative N-terminus
sp_v2.0_unigene26552 SustainPine v2.0 1371
AutoFact: DNA polymerase III subunit epsilon n=3 Tax=Zea mays RepID=B6TZF8_MAIZE 0.0
FL-Next: tr=DNA polymerase III subunit epsilon; Zea mays (Maize). 0.0
Blast2go: dna polymerase iii polc-type-like 0.0
Complete
sp_v2.0_unigene29190 SustainPine v2.0 829
AutoFact: PREDICTED: similar to KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter n=1 Tax=Vitis vinifera RepID=UPI0001984E30 0.0
FL-Next: sp=K(+) efflux antiporter 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: k(+) efflux antiporter chloroplastic-like 0.0
Internal
sp_v2.0_unigene32366 SustainPine v2.0 761
AutoFact: cleavage/polyadenylation specificity factor [Arabidopsis thaliana] dbj|BAC42701.1| unknown protein [Arabidopsis thaliana] gb|AAO63939.1| unknown protein [Arabidopsis thaliana] dbj|BAF00402.1| hypothetical protein [Arabidopsis thaliana] gb|AEE85076.1| clea 4.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cleavage and polyadenylation specificity factor 5 1.62096e-35
N-terminus
sp_v2.0_unigene37566 SustainPine v2.0 308
AutoFact: DNA mismatch repair protein n=1 Tax=Cucumis sativus RepID=B3U2A3_CUCSA 5.0e-24
FL-Next: tr=DNA mismatch repair protein; Cucumis sativus (Cucumber). 0.0
Blast2go: dna mismatch repair protein 5.17035e-28
Putative C-terminus
sp_v2.0_unigene40146 SustainPine v2.0 233
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNF5_RICCO 1.0e-16
FL-Next: sp=DNA mismatch repair protein Msh6-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-1 8.3216e-20
Internal
sp_v2.0_unigene40473 SustainPine v2.0 761
AutoFact: DNA mismatch repair protein MSH6-2, putative n=1 Tax=Ricinus communis RepID=B9RKT8_RICCO 0.0
FL-Next: sp=DNA mismatch repair protein Msh6-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-2 0.0
Internal
sp_v2.0_unigene40553 SustainPine v2.0 307
AutoFact: DNA mismatch repair protein [Petunia x hybrida] 3.0e-10
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 1.53451e-16
Internal
sp_v2.0_unigene41691 SustainPine v2.0 217
AutoFact: DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp|O65607.2|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb|CAA07684.1| Msh3 protein [Arabidopsis thaliana] gb|AEE85075.1| DNA mismatch repair protein Msh3 [Arabidopsis th 1.0e-24
FL-Next: sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein 4.33037e-34
Internal
sp_v2.0_unigene43935 SustainPine v2.0 440
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dna mismatch repair protein 9.2333e-32
Internal
sp_v2.0_unigene44416 SustainPine v2.0 234
AutoFact: MutS homolog 7 [Triticum aestivum] 4.0e-26
FL-Next: sp=DNA mismatch repair protein Msh6-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna mismatch repair protein msh6-2 2.07809e-36
Internal
sp_v2.0_unigene48404 SustainPine v2.0 378
AutoFact: Similarity to mismatch repair protein MutS n=1 Tax=Arabidopsis thaliana RepID=Q9LTP4_ARATH 2.0e-33
FL-Next: tr=At3g20475; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: muts protein homolog 5-like 1.64908e-40
Putative N-terminus
sp_v2.0_unigene55263 SustainPine v2.0 403
AutoFact: DNA mismatch repair protein MutS2 [Arabidopsis thaliana] gb|AAF06041.1|AC009360_6 Contains similarity to gb|D90908 DNA mismatch repair protein MutS2 from Synechocystis sp. and is a member of PF|00488 Muts family of mismatch repair proteins [Arabidopsis th 4.0e-25
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: 2 family protein 7.35724e-31
Internal
sp_v2.0_unigene55836 SustainPine v2.0 275
AutoFact: OSJNBb0017I01.21 protein n=3 Tax=Oryza sativa RepID=Q7XKD3_ORYSJ 2.0e-25
FL-Next: tr=Os04g0680700 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dna mismatch repair protein 2 9.96386e-32
Internal
sp_v2.0_unigene57036 SustainPine v2.0 641
AutoFact: DNA mismatch repair protein (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q1XBQ6_SOLLC 0.0
FL-Next: tr=ATP binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: dna mismatch repair protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain