Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: SKP1 component

Term: IPR001232  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene326 SustainPine v2.0 2332
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] gb|AAC67324.1| similar to axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gb|AAM13108.1| similar to axi 1 protein [Arabidopsis thaliana] gb|AAM91218.1| similar to axi 1 protein [Arabid 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
Putative Complete
sp_v2.0_unigene1516 SustainPine v2.0 2227
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] gb|AAP68214.1| At4g24530 [Arabidopsis thaliana] dbj|BAE99793.1| PsRT17-1 like protein [Arabidopsis thaliana] gb|AEE84921.1| O-fucosyltransferase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
Complete
sp_v2.0_unigene1938 SustainPine v2.0 1973
AutoFact: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RDT2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: skp1-like protein 21-like 0.0
Complete
sp_v2.0_unigene2539 SustainPine v2.0 1423
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: skp1-like protein 21-like 7.39522e-13
C-terminus
sp_v2.0_unigene17099 SustainPine v2.0 840
AutoFact: SKP1 n=1 Tax=Pellia endiviifolia (species B) RepID=C9WCK3_9MARC 5.0e-39
FL-Next: sp=SKP1-like protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 1.02203e-38
Complete
sp_v2.0_unigene17709 SustainPine v2.0 1210
AutoFact: SCF ubiquitin ligase n=4 Tax=Picea RepID=Q3ZDI8_PICAB 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene26724 SustainPine v2.0 420
AutoFact: transcription elongation factor B, polypeptide 1 [Arabidopsis thaliana] ref|XP_002863037.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata] ref|XP_002864612.1| SKP1 family protein [Arabidopsis lyrata subsp. lyrata] dbj|BAB09760.1| unnamed protein p 8.0e-07
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: elongin c 5.3238e-15
N-terminus
sp_v2.0_unigene34428 SustainPine v2.0 656
AutoFact: SKP1 family protein n=2 Tax=Arabidopsis RepID=D7MR79_ARALL 7.0e-15
FL-Next: tr=Putative elongin protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: skp1 family protein 1.39685e-18
C-terminus
sp_v2.0_unigene39640 SustainPine v2.0 676
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] gb|AAM26669.1| AT4g16650/dl4350w [Arabidopsis thaliana] gb|AAN18192.1| At4g16650/dl4350w [Arabidopsis thaliana] dbj|BAD43586.1| growth regulator like protein [Arabidopsis thaliana] gb|AEE83780.1| 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
Internal
sp_v2.0_unigene61412 SustainPine v2.0 817
AutoFact: SCF ubiquitin ligase n=4 Tax=Picea RepID=Q3ZDI8_PICAB 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene70032 SustainPine v2.0 404
AutoFact: SCF ubiquitin ligase n=4 Tax=Picea RepID=Q3ZDI8_PICAB 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene84110 SustainPine v2.0 631
AutoFact: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RIW2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: skp1-like protein 21 0.0
Putative Complete
sp_v2.0_unigene91551 SustainPine v2.0 1013
AutoFact: SCF ubiquitin ligase n=4 Tax=Picea RepID=Q3ZDI8_PICAB 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain