Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v2.0

Name: mRNA splicing factor SYF2

Term: IPR013260  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene6644 SustainPine v2.0 1744
AutoFact: pre-mRNA-splicing factor SYF2 [Arabidopsis thaliana] gb|AAC64217.2| Expressed protein [Arabidopsis thaliana] gb|AAM15083.1| Expressed protein [Arabidopsis thaliana] gb|AAM20452.1| unknown protein [Arabidopsis thaliana] gb|AAM91242.1| unknown protein [Arab 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: gcip-interacting family 0.0
Putative Complete
sp_v2.0_unigene60271 SustainPine v2.0 687
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Picea sitchensis RepID=A9NLD0_PICSI 6.00036e-42
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v2.0_unigene60363 SustainPine v2.0 525
AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Lupinus luteus RepID=CYPH_LUPLU 2.0e-36
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
Blast2go: peptidylprolyl isomerase roc1 2.91383e-36
C-terminus
sp_v2.0_unigene60923 SustainPine v2.0 938
AutoFact: Peptidyl-prolyl cis-trans isomerase n=3 Tax=Pinaceae RepID=A5HIY2_PINTA 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine). 0.0
Blast2go: cyclophilin 0.0
Complete
sp_v2.0_unigene64017 SustainPine v2.0 465
AutoFact: Pre-mRNA-splicing factor syf2, putative n=1 Tax=Ricinus communis RepID=B9S5M2_RICCO 6.0e-06
FL-Next: tr=Pre-mRNA-splicing factor syf2, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v2.0_unigene65054 SustainPine v2.0 730
AutoFact: Pre-mRNA-splicing factor syf2 (Fragment) n=1 Tax=Camellia sinensis RepID=F4YFJ8_CAMSI 8.0e-35
FL-Next: tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: pre-mrna-splicing factor syf2 1.00473e-42
C-terminus
sp_v2.0_unigene70312 SustainPine v2.0 327
AutoFact: pfam08231, SYF2, SYF2 splicing factor 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pre-mrna-splicing factor syf2-like 2.38271e-30
Internal
sp_v2.0_unigene82319 SustainPine v2.0 790
AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
Blast2go: cyclophilin 0.0
Putative Complete

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain