Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA polymerase II, large subunit, CTD

Term: IPR006569  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene5618 SustainPine v2.0 1387
AutoFact: DUF618 multi-domain protein 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: enth vhs family protein 0.0
Internal
sp_v2.0_unigene5862 SustainPine v2.0 1340
AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene6116 SustainPine v2.0 786
AutoFact: DUF618 domain containing protein 1.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: regulation of nuclear pre-mrna domain-containing protein 2-like 0.0
N-terminus
sp_v2.0_unigene6494 SustainPine v2.0 2994
AutoFact: contains similarity to human PCF11p homolog (GB:AF046935) [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
Putative C-terminus
sp_v2.0_unigene11098 SustainPine v2.0 595
AutoFact: U2-associated protein SR140 [Arabidopsis thaliana] gb|AAK25922.1|AF360212_1 unknown protein [Arabidopsis thaliana] gb|AAK64118.1| unknown protein [Arabidopsis thaliana] gb|AED93395.1| U2-associated protein SR140 [Arabidopsis thaliana] 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 1.25054e-19
N-terminus
sp_v2.0_unigene13076 SustainPine v2.0 463
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNU3_RICCO 0.0
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene14744 SustainPine v2.0 2599
AutoFact: PCF11P-similar protein 4 [Arabidopsis thaliana] dbj|BAF00997.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82437.1| PCF11P-similar protein 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene19697 SustainPine v2.0 168
AutoFact: Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana] gb|AAD31171.1| putative transcription factor [Arabidopsis thaliana] dbj|BAB11170.1| transcription factor-like protein [Arabidopsis thaliana] dbj|BAH30593.1| hypothetical protein [Arabidopsis 4.0e-17
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: tudor pwwp mbt domain-containing protein 2.18558e-22
Internal
sp_v2.0_unigene19837 SustainPine v2.0 954
AutoFact: Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana] gb|AAD31171.1| putative transcription factor [Arabidopsis thaliana] dbj|BAB11170.1| transcription factor-like protein [Arabidopsis thaliana] dbj|BAH30593.1| hypothetical protein [Arabidopsis 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: tudor pwwp mbt domain-containing protein 6.71891e-32
N-terminus
sp_v2.0_unigene20803 SustainPine v2.0 372
AutoFact: Glutathione peroxidase (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z6F2_PICSI 0.0
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glutathione peroxidase-like protein 0.0
Putative N-terminus
sp_v2.0_unigene20823 SustainPine v2.0 444
AutoFact: Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI 0.0
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glutathione peroxidase-like protein 0.0
N-terminus
sp_v2.0_unigene21206 SustainPine v2.0 2243
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: swap surp domain-containing protein 0.0
C-terminus
sp_v2.0_unigene21279 SustainPine v2.0 861
AutoFact: Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana] gb|AAD31171.1| putative transcription factor [Arabidopsis thaliana] dbj|BAB11170.1| transcription factor-like protein [Arabidopsis thaliana] dbj|BAH30593.1| hypothetical protein [Arabidopsis 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: tudor pwwp mbt domain-containing protein 0.0
Internal
sp_v2.0_unigene22923 SustainPine v2.0 1228
AutoFact: Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI 0.0
FL-Next: sp=Probable phospholipid hydroperoxide glutathione peroxidase; Citrus sinensis (Sweet orange). 0.0
Blast2go: glutathione peroxidase-like protein 0.0
Complete
sp_v2.0_unigene28685 SustainPine v2.0 1119
AutoFact: Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI 0.0
FL-Next: sp=Probable phospholipid hydroperoxide glutathione peroxidase; Citrus sinensis (Sweet orange). 0.0
Blast2go: glutathione peroxidase-like protein 0.0
Complete
sp_v2.0_unigene30468 SustainPine v2.0 592
AutoFact: plastocyanin-like domain-containing protein [Arabidopsis thaliana] gb|AAB95306.1| putative phytocyanin [Arabidopsis thaliana] gb|AEC07879.1| plastocyanin-like domain-containing protein [Arabidopsis thaliana] 4.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: plastocyanin-like domain-containing protein 3.72481e-34
N-terminus
sp_v2.0_unigene43719 SustainPine v2.0 619
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 2.0e-29
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: 20-like protein 4.23164e-33
Internal
sp_v2.0_unigene43963 SustainPine v2.0 417
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNU3_RICCO 6.0e-24
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: protein 2.79951e-27
Internal
sp_v2.0_unigene51520 SustainPine v2.0 495
AutoFact: Glutathione peroxidase n=1 Tax=Taiwanofungus camphoratus RepID=B8K1J5_TAICA 0.0
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glutathione peroxidase 0.0
Putative Complete
sp_v2.0_unigene55753 SustainPine v2.0 424
AutoFact: T4B21.1 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZS85_ARATH 2.0e-12
FL-Next: tr=Putative uncharacterized protein At4g04885; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pcf11p-similar protein 4 5.90206e-14
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain