Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA polymerase II, large subunit, CTD

Term: IPR006569  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene55996 SustainPine v2.0 116
AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 7.0e-08
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v2.0_unigene56073 SustainPine v2.0 330
AutoFact: Drf_FH1 multi-domain protein 6.0e-20
Coding
sp_v2.0_unigene56938 SustainPine v2.0 357
AutoFact: putative pre-mRNA cleavage complex II protein Pcf11 [Oryza sativa Japonica Group] dbj|BAD46240.1| putative KIAA protein [Oryza sativa Japonica Group] 4.0e-37
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pre-mrna cleavage complex 2 protein pcf11 1.4013e-45
Internal
sp_v2.0_unigene58931 SustainPine v2.0 751
AutoFact: Glutathione peroxidase n=1 Tax=Ricinus communis RepID=B9T4A6_RICCO 5.99756e-43
FL-Next: sp=Glutathione peroxidase; Ricinus communis (Castor bean). 0.0
Blast2go: tudor pwwp mbt domain-containing protein 0.0
Internal
sp_v2.0_unigene59611 SustainPine v2.0 313
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: swap surp domain-containing protein 4.34597e-12
Internal
sp_v2.0_unigene60777 SustainPine v2.0 618
AutoFact: Glutathione peroxidase-like protein (Fragment) n=10 Tax=Picea sitchensis RepID=E0Z6W2_PICSI 2.0e-38
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glutathione peroxidase-like protein 0.0
Complete
sp_v2.0_unigene61275 SustainPine v2.0 801
AutoFact: Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI 0.0
FL-Next: sp=Probable phospholipid hydroperoxide glutathione peroxidase; crystallinum). 0.0
Blast2go: glutathione peroxidase-like protein 0.0
Complete
sp_v2.0_unigene61389 SustainPine v2.0 705
AutoFact: Glutathione peroxidase (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z6F2_PICSI 0.0
FL-Next: sp=Probable phospholipid hydroperoxide glutathione peroxidase; Spinacia oleracea (Spinach). 0.0
Blast2go: glutathione peroxidase-like protein 0.0
Complete
sp_v2.0_unigene61465 SustainPine v2.0 340
AutoFact: Glutathione peroxidase-like protein (Fragment) n=10 Tax=Picea sitchensis RepID=E0Z6W2_PICSI 5.0e-22
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glutathione peroxidase-like protein 2.40231e-29
C-terminus
sp_v2.0_unigene61815 SustainPine v2.0 731
AutoFact: Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI 0.0
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glutathione peroxidase-like protein 0.0
Complete
sp_v2.0_unigene62379 SustainPine v2.0 1043
AutoFact: Glutathione peroxidase (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z6F2_PICSI 0.0
FL-Next: sp=Probable phospholipid hydroperoxide glutathione peroxidase; crystallinum). 0.0
Blast2go: glutathione peroxidase-like protein 0.0
Complete
sp_v2.0_unigene62431 SustainPine v2.0 561
AutoFact: FAP multi-domain protein 2.0e-17
Coding
sp_v2.0_unigene63239 SustainPine v2.0 447
AutoFact: Glutathione peroxidase n=1 Tax=Ricinus communis RepID=B9T4A6_RICCO 1.0e-36
FL-Next: sp=Glutathione peroxidase; Ricinus communis (Castor bean). 0.0
Blast2go: tudor pwwp mbt domain-containing protein 9.02857e-42
N-terminus
sp_v2.0_unigene68208 SustainPine v2.0 387
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: swap surp domain-containing protein 2.69929e-11
Internal
sp_v2.0_unigene72820 SustainPine v2.0 181
AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 5.0e-14
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: hypothetical protein VITISV_025939 [Vitis vinifera] 1.76982e-14
Internal
sp_v2.0_unigene74559 SustainPine v2.0 420
AutoFact: Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI 2.0e-29
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glutathione peroxidase-like protein 1.45172e-37
Internal
sp_v2.0_unigene79677 SustainPine v2.0 578
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SPT4_RICCO 7.0e-30
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: swap surp domain-containing protein 0.0
C-terminus
sp_v2.0_unigene80182 SustainPine v2.0 322
AutoFact: pfam04554, Extensin_2, Extensin-like region 3.0e-24
Coding
sp_v2.0_unigene84913 SustainPine v2.0 1271
AutoFact: Glutathione peroxidase (Fragment) n=20 Tax=Picea sitchensis RepID=E5F5S9_PICSI 0.0
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glutathione peroxidase-like protein 0.0
Complete
sp_v2.0_unigene88377 SustainPine v2.0 358
AutoFact: Glutathione peroxidase n=1 Tax=Picea sitchensis RepID=A9NS67_PICSI 2.0e-16
FL-Next: sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glutathione peroxidase-like protein 1.12839e-20
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain