Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Extensin repeat

Term: IPR006706  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene21387 SustainPine v2.0 380
AutoFact: Extensin_2 multi-domain protein 3.0e-11
unknown
sp_v2.0_unigene21897 SustainPine v2.0 1103
AutoFact: Atrophin-1 multi-domain protein 7.0e-16
Coding
sp_v2.0_unigene22080 SustainPine v2.0 594
AutoFact: DUF1421 multi-domain protein 1.0e-09
Coding
sp_v2.0_unigene22087 SustainPine v2.0 1659
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 3.9937e-43
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase 0.0
C-terminus
sp_v2.0_unigene22427 SustainPine v2.0 747
AutoFact: DUF1421 multi-domain protein 6.0e-12
Coding
sp_v2.0_unigene22764 SustainPine v2.0 1361
AutoFact: leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
sp_v2.0_unigene22953 SustainPine v2.0 1275
AutoFact: FAP multi-domain protein 6.0e-14
Putative coding
sp_v2.0_unigene22967 SustainPine v2.0 918
AutoFact: Extensin_2 multi-domain protein 4.0e-11
Coding
sp_v2.0_unigene23225 SustainPine v2.0 1057
AutoFact: PREDICTED: similar to retinitis pigmentosa 1-like 1 protein [Gallus gallus] 3.0e-05
Blast2go: unnamed protein product [Vitis vinifera] 1.6783e-12
Coding
sp_v2.0_unigene23368 SustainPine v2.0 1394
AutoFact: Putative p23 co-chaperone n=1 Tax=Cryptomeria japonica RepID=Q1XG56_CRYJA 3.00018e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein _027940-like 0.0
Complete
sp_v2.0_unigene23480 SustainPine v2.0 803
AutoFact: pfam04554, Extensin_2, Extensin-like region 2.0e-24
Coding
sp_v2.0_unigene23504 SustainPine v2.0 1260
AutoFact: leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene23944 SustainPine v2.0 1179
AutoFact: Leucine-rich repeat extensin-like protein 3 n=1 Tax=Arabidopsis thaliana RepID=LRX3_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
sp_v2.0_unigene24110 SustainPine v2.0 829
AutoFact: leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene24163 SustainPine v2.0 1320
AutoFact: leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
sp_v2.0_unigene24735 SustainPine v2.0 1496
AutoFact: Atrophin-1 multi-domain protein 5.0e-32
Coding
sp_v2.0_unigene24740 SustainPine v2.0 812
AutoFact: Extensin_2 multi-domain protein 2.0e-16
Coding
sp_v2.0_unigene24744 SustainPine v2.0 1097
AutoFact: Drf_FH1 multi-domain protein 2.0e-18
Coding
sp_v2.0_unigene24745 SustainPine v2.0 964
AutoFact: DUF1421 multi-domain protein 1.0e-18
Coding
sp_v2.0_unigene24754 SustainPine v2.0 965
AutoFact: Drf_FH1 multi-domain protein 5.0e-20
Coding

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain