Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Repetitive proline-rich cell wall protein repeat

Term: IPR003883  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene17162 SustainPine v2.0 886
AutoFact: Tryp_alpha_amyl multi-domain protein 1.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lipid binding 1.06045e-19
C-terminus
sp_v2.0_unigene17378 SustainPine v2.0 830
AutoFact: Extensin_2 multi-domain protein 5.0e-10
Putative coding
sp_v2.0_unigene21156 SustainPine v2.0 1154
AutoFact: Tyrosine-rich hydroxyproline-rich glycoprotein (Fragment) n=1 Tax=Petroselinum crispum RepID=Q40793_PETCR 7.0e-25
FL-Next: tr=Putative uncharacterized protein Sb03g042800; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: tyrosine-rich hydroxyproline-rich glycoprotein 2.02773e-28
Putative N-terminus
sp_v2.0_unigene21897 SustainPine v2.0 1103
AutoFact: Atrophin-1 multi-domain protein 7.0e-16
Coding
sp_v2.0_unigene22427 SustainPine v2.0 747
AutoFact: DUF1421 multi-domain protein 6.0e-12
Coding
sp_v2.0_unigene22764 SustainPine v2.0 1361
AutoFact: leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
sp_v2.0_unigene23225 SustainPine v2.0 1057
AutoFact: PREDICTED: similar to retinitis pigmentosa 1-like 1 protein [Gallus gallus] 3.0e-05
Blast2go: unnamed protein product [Vitis vinifera] 1.6783e-12
Coding
sp_v2.0_unigene23480 SustainPine v2.0 803
AutoFact: pfam04554, Extensin_2, Extensin-like region 2.0e-24
Coding
sp_v2.0_unigene23504 SustainPine v2.0 1260
AutoFact: leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene23944 SustainPine v2.0 1179
AutoFact: Leucine-rich repeat extensin-like protein 3 n=1 Tax=Arabidopsis thaliana RepID=LRX3_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
sp_v2.0_unigene24110 SustainPine v2.0 829
AutoFact: leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
sp_v2.0_unigene24163 SustainPine v2.0 1320
AutoFact: leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
sp_v2.0_unigene24735 SustainPine v2.0 1496
AutoFact: Atrophin-1 multi-domain protein 5.0e-32
Coding
sp_v2.0_unigene24740 SustainPine v2.0 812
AutoFact: Extensin_2 multi-domain protein 2.0e-16
Coding
sp_v2.0_unigene24744 SustainPine v2.0 1097
AutoFact: Drf_FH1 multi-domain protein 2.0e-18
Coding
sp_v2.0_unigene24754 SustainPine v2.0 965
AutoFact: Drf_FH1 multi-domain protein 5.0e-20
Coding
sp_v2.0_unigene24757 SustainPine v2.0 1053
AutoFact: DUF1421 multi-domain protein 2.0e-18
Coding
sp_v2.0_unigene25982 SustainPine v2.0 425
AutoFact: Selectin, platelet (P-selectin) ligand, isoform CRA_b n=2 Tax=Mus musculus RepID=Q3TA56_MOUSE 3.0e-08
FL-Next: sp=Putative membrane protein ycf1; Cucumis sativus (Cucumber). Plastid; Chloroplast. 0.0
Blast2go: sica antigen 1.52771e-11
Internal
sp_v2.0_unigene26609 SustainPine v2.0 596
AutoFact: Extensin_2 multi-domain protein 5.0e-18
Coding
sp_v2.0_unigene30534 SustainPine v2.0 438
AutoFact: Extensin_2 multi-domain protein 1.0e-13
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain