Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v2.0

Name: RNA-processing protein, HAT helix

Term: IPR003107  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene360 SustainPine v2.0 2805
AutoFact: DUF946 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100259944 0.0
Putative Complete
sp_v2.0_unigene604 SustainPine v2.0 1271
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein rrp5 homolog 0.0
C-terminus
sp_v2.0_unigene1235 SustainPine v2.0 2360
AutoFact: cell cycle control crn (crooked neck) protein-like [Arabidopsis thaliana] 0.0
FL-Next: sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Blast2go: pre-mrna-splicing factor clf1 0.0
C-terminus
sp_v2.0_unigene2027 SustainPine v2.0 1046
AutoFact: WS03718.C21_A24 SS-B-N-22 Picea sitchensis cDNA clone WS03718_A24 3', mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein 0.0
Putative C-terminus
sp_v2.0_unigene2354 SustainPine v2.0 1396
AutoFact: XPA-binding protein, putative; K12867 pre-mRNA-splicing factor SYF1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pre-mrna-splicing factor syf1-like 0.0
C-terminus
sp_v2.0_unigene2604 SustainPine v2.0 2325
AutoFact: cleavage stimulation factor 77 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: plant rna cleavage stimulation 0.0
C-terminus
sp_v2.0_unigene4853 SustainPine v2.0 1774
AutoFact: FAP multi-domain protein 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 5.35504e-29
Putative Complete
sp_v2.0_unigene6745 SustainPine v2.0 1472
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Blast2go: tetratricopeptide repeat domain-containing protein 8.01456e-30
Complete
sp_v2.0_unigene7496 SustainPine v2.0 1111
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100809777 3.36312e-44
C-terminus
sp_v2.0_unigene7511 SustainPine v2.0 1254
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tetratricopeptide repeat domain-containing protein 2.8026e-45
C-terminus
sp_v2.0_unigene8914 SustainPine v2.0 2824
AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene11880 SustainPine v2.0 3052
AutoFact: putative pre-mRNA splicing factor [Oryza sativa Japonica Group] gb|AAP54456.1| U5 snRNP-associated 102 kDa protein, putative, expressed [Oryza sativa Japonica Group] gb|EAY79087.1| hypothetical protein OsI_34194 [Oryza sativa Indica Group] 0.0
FL-Next: sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Blast2go: pre-mrna splicing factor 0.0
Complete
sp_v2.0_unigene12109 SustainPine v2.0 506
AutoFact: XPA-binding protein, putative; K12867 pre-mRNA-splicing factor SYF1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pre-mrna-splicing factor syf1 0.0
Internal
sp_v2.0_unigene12590 SustainPine v2.0 981
AutoFact: XPA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9S614_RICCO 0.0
FL-Next: tr=XPA-binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: pre-mrna-splicing factor syf1-like 0.0
Internal
sp_v2.0_unigene14090 SustainPine v2.0 1466
AutoFact: FAP multi-domain protein 8.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100809777 7.79977e-41
Complete
sp_v2.0_unigene14819 SustainPine v2.0 976
AutoFact: DUF946 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: uncharacterized protein 0.0
C-terminus
sp_v2.0_unigene15721 SustainPine v2.0 1197
AutoFact: FAP multi-domain protein 3.0e-09
FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Blast2go: uncharacterized protein loc100784254 1.70422e-38
Complete
sp_v2.0_unigene18471 SustainPine v2.0 1866
AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 3.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tpr domain protein 0.0
Complete
sp_v2.0_unigene19064 SustainPine v2.0 535
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tpr domain protein 2.34393e-33
C-terminus
sp_v2.0_unigene19236 SustainPine v2.0 522
AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-processing factor 39 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain