Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA-processing protein, HAT helix

Term: IPR003107  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene46936 SustainPine v2.0 341
AutoFact: protein high chlorophyll fluorescent 107 [Arabidopsis thaliana] gb|AAM13111.1| unknown protein [Arabidopsis thaliana] gb|AAP37764.1| At3g17040 [Arabidopsis thaliana] gb|AEE75897.1| protein high chlorophyll fluorescent 107 [Arabidopsis thaliana] 7.0e-15
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein high chlorophyll fluorescent 107 1.66751e-19
Internal
sp_v2.0_unigene47965 SustainPine v2.0 224
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_77.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SYL4_VITVI 2.0e-28
FL-Next: sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Blast2go: protein high chlorophyll fluorescent 107 8.45881e-34
Internal
sp_v2.0_unigene55689 SustainPine v2.0 106
AutoFact: protein high chlorophyll fluorescent 107 [Arabidopsis thaliana] gb|AAM13111.1| unknown protein [Arabidopsis thaliana] gb|AAP37764.1| At3g17040 [Arabidopsis thaliana] gb|AEE75897.1| protein high chlorophyll fluorescent 107 [Arabidopsis thaliana] 6.0e-07
FL-Next: tr=Protein high chlorophyll fluorescent 107; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v2.0_unigene59058 SustainPine v2.0 434
AutoFact: iy93c07.g1 Cycas ovule - normalized (NYBG) Cycas rumphii cDNA 3', mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein 1.08592e-26
Internal
sp_v2.0_unigene63241 SustainPine v2.0 440
AutoFact: Plant RNA cleavage stimulation factor, putative n=1 Tax=Ricinus communis RepID=B9S078_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: mrna 3 -end-processing protein rna14 0.0
Putative N-terminus
sp_v2.0_unigene65282 SustainPine v2.0 663
AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pre-mrna-processing factor 39 1.92438e-36
Internal
sp_v2.0_unigene66148 SustainPine v2.0 609
AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 2.8026e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-processing factor 39 0.0
Putative C-terminus
sp_v2.0_unigene67516 SustainPine v2.0 543
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: uncharacterized protein 1.87671e-25
Internal
sp_v2.0_unigene70013 SustainPine v2.0 218
AutoFact: Os02g0772500 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6ZHF3_ORYSJ 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: uncharacterized protein 3.36329e-17
Internal
sp_v2.0_unigene77689 SustainPine v2.0 648
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100257716 4.51646e-27
Putative C-terminus
sp_v2.0_unigene82559 SustainPine v2.0 715
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tpr domain protein 5.31497e-29
C-terminus
sp_v2.0_unigene82653 SustainPine v2.0 416
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tpr domain protein 2.12776e-30
C-terminus
sp_v2.0_unigene84451 SustainPine v2.0 1403
AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain