Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Helicase/RNase D C-terminal, HRDC domain

Term: IPR002121  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene645 SustainPine v2.0 4499
AutoFact: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] ref|NP_001117233.1| Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana] gb|AAF79721.1|AC005106_2 T25N20.3 [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v2.0_unigene678 SustainPine v2.0 1936
AutoFact: DUF668 multi-domain protein 2.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
Complete
sp_v2.0_unigene5637 SustainPine v2.0 1472
AutoFact: DNA helicase recq1, putative n=1 Tax=Ricinus communis RepID=B9S1J8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent dna helicase q-like 2 0.0
C-terminus
sp_v2.0_unigene6884 SustainPine v2.0 766
AutoFact: Exosome complex exonuclease RRP6 n=3 Tax=Arabidopsis RepID=A9LLI7_ARATH 3.0e-26
FL-Next: tr=Putative nucleolar protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: exosome component 10-like 4.42875e-29
N-terminus
sp_v2.0_unigene7069 SustainPine v2.0 689
AutoFact: ATP-dependent DNA helicase Q-like 3 n=2 Tax=Arabidopsis thaliana RepID=RQL3_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent dna helicase q-like 3 0.0
Internal
sp_v2.0_unigene8046 SustainPine v2.0 599
AutoFact: ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp|Q9FT73.1|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana] gb|AE 3.99931e-42
FL-Next: sp=ATP-dependent DNA helicase Q-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atp-dependent dna helicase q-like 2-like 0.0
Putative N-terminus
sp_v2.0_unigene9641 SustainPine v2.0 3088
AutoFact: pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rrp6-like protein 1 0.0
Putative Complete
sp_v2.0_unigene11164 SustainPine v2.0 508
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_118.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T513_VITVI 3.9937e-43
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100263642 0.0
Internal
sp_v2.0_unigene11476 SustainPine v2.0 735
AutoFact: PREDICTED: similar to RECQSIM (Arabidopsis RecQ helicase sim); ATP-dependent helicase n=1 Tax=Vitis vinifera RepID=UPI00019849D7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent dna helicase q-like sim-like 0.0
C-terminus
sp_v2.0_unigene13303 SustainPine v2.0 538
AutoFact: ATP-dependent DNA helicase RecQ [Desulfotomaculum reducens MI-1] gb|ABO49795.1| ATP-dependent DNA helicase, RecQ-like protein [Desulfotomaculum reducens MI-1] 4.0e-08
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: atp-dependent dna helicase 0.0
Internal
sp_v2.0_unigene21051 SustainPine v2.0 2671
AutoFact: DUF668 multi-domain protein 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
Complete
sp_v2.0_unigene29537 SustainPine v2.0 355
AutoFact: 3'-5' exonuclease, putative n=1 Tax=Ricinus communis RepID=B9SDW9_RICCO 5.0e-40
FL-Next: tr=Putative uncharacterized protein At2g32420; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rrp6-like protein 3 0.0
Internal
sp_v2.0_unigene31296 SustainPine v2.0 557
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rrp6-like protein 3 0.0
Internal
sp_v2.0_unigene36929 SustainPine v2.0 642
AutoFact: Os07g0681600 protein n=3 Tax=Oryza sativa RepID=Q7XHW1_ORYSJ 0.0
FL-Next: sp=ATP-dependent DNA helicase Q-like SIM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atp-dependent dna helicase 0.0
Internal
sp_v2.0_unigene37063 SustainPine v2.0 314
AutoFact: RecQ-like helicase 2 [Oryza sativa Japonica Group] 9.80909e-45
FL-Next: Isoform 2 of ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana GN=RECQL2 0.0
Blast2go: atp-dependent dna family expressed 0.0
Internal
sp_v2.0_unigene37584 SustainPine v2.0 455
AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9SXG0_RICCO 2.0e-22
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna helicase 1.88456e-25
Internal
sp_v2.0_unigene37763 SustainPine v2.0 694
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: hypothetical protein MTR_4g116470 [Medicago truncatula] 1.96182e-44
N-terminus
sp_v2.0_unigene38471 SustainPine v2.0 857
AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9RFH2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna helicase 0.0
Putative N-terminus
sp_v2.0_unigene43308 SustainPine v2.0 411
AutoFact: [L] COG0514 Superfamily II DNA helicase 4.0e-23
FL-Next: Isoform 2 of ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana GN=RECQL2 0.0
Blast2go: werner syndrome atp-dependent helicase homolog 0.0
Internal
sp_v2.0_unigene50181 SustainPine v2.0 270
AutoFact: DNA Helicase [Arabidopsis thaliana] 2.0e-23
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna helicase 3.27465e-29
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain