Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Ribosomal protein S1, RNA-binding domain

Term: IPR003029  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene13921 SustainPine v2.0 1787
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
Complete
sp_v2.0_unigene14988 SustainPine v2.0 622
• AutoFact: RNAse E/G-like protein n=8 Tax=Arabidopsis RepID=F4IV66_ARATH 2.0e-39
• FL-Next: tr=At2g04270; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rnase e g-like protein 5.60519e-45
C-terminus
sp_v2.0_unigene16782 SustainPine v2.0 1831
• AutoFact: exosome complex component RRP4 [Arabidopsis thaliana] gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis thaliana] gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana] dbj|BAD43995 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: exosome complex component rrp4-like 0.0
Complete
sp_v2.0_unigene16913 SustainPine v2.0 1548
• AutoFact: exosome complex component RRP4 [Arabidopsis thaliana] gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis thaliana] gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana] dbj|BAD43995 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: exosome complex component rrp4-like 0.0
Putative Complete
sp_v2.0_unigene17146 SustainPine v2.0 607
• AutoFact: Mpp10 multi-domain protein 2.0e-06
Coding
sp_v2.0_unigene17246 SustainPine v2.0 1812
• AutoFact: Eukaryotic translation initiation factor 2 subunit 1 [Arabidopsis thaliana] gb|AAL86344.1| putative eukaryotic translation initiation factor 2 alpha subunit eIF2 [Arabidopsis thaliana] gb|AAD25664.2| putative eukaryotic translation initiation factor 2 alp 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: eukaryotic translation initiation factor 2 subunit alpha 0.0
Complete
sp_v2.0_unigene17524 SustainPine v2.0 1682
• AutoFact: 30S ribosomal protein S1, chloroplastic n=1 Tax=Spinacia oleracea RepID=RR1_SPIOL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ribosomal protein s1 0.0
Complete
sp_v2.0_unigene17909 SustainPine v2.0 565
• AutoFact: transcription elongation factor SPT6 [Arabidopsis thaliana] gb|AEE34374.1| transcription elongation factor SPT6 [Arabidopsis thaliana] 6.0e-12
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: transcription elongation factor spt6 1.43192e-34
Internal
sp_v2.0_unigene19347 SustainPine v2.0 2006
• AutoFact: AMSH-like ubiquitin thiolesterase 1 [Arabidopsis thaliana] sp|Q8VYB5.1|AMSH1_ARATH RecName: Full=AMSH-like ubiquitin thiolesterase 1; AltName: Full=Deubiquitinating enzyme AMSH1 gb|AAL60033.1| unknown protein [Arabidopsis thaliana] gb|AAM20241.1| unknown 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: amsh-like ubiquitin thiolesterase 1-like 0.0
Complete
sp_v2.0_unigene20102 SustainPine v2.0 714
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pre-mrna-splicing factor atp-dependent rna helicase 0.0
Putative N-terminus
sp_v2.0_unigene20809 SustainPine v2.0 2995
• AutoFact: Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK03_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: eukaryotic translation initiation factor 5b 0.0
Complete
sp_v2.0_unigene20868 SustainPine v2.0 900
• AutoFact: DNA-directed RNA polymerase [Arabidopsis thaliana] ref|NP_974148.1| DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AAN12946.1| unknown protein [Arabidopsis thaliana] gb|AEE35743.1| DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AEE35744.1| D 8.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerase 0.0
Putative N-terminus
sp_v2.0_unigene21462 SustainPine v2.0 904
• AutoFact: exosome complex component RRP4 [Arabidopsis thaliana] gb|AAC72108.1| Similar to hypothetical protein SPAC2F7.14c gi|1052797 from Schizosaccharomyces pombe cosmid gb|Z50142 [Arabidopsis thaliana] gb|AAQ65156.1| At1g03360 [Arabidopsis thaliana] dbj|BAD43995 5.04467e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: exosome complex component rrp4-like 0.0
N-terminus
sp_v2.0_unigene24819 SustainPine v2.0 1078
• AutoFact: putative 30S ribosomal protein S1 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 30s ribosomal protein s1-like 0.0
C-terminus
sp_v2.0_unigene25478 SustainPine v2.0 1807
• AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 0.0
Complete
sp_v2.0_unigene25942 SustainPine v2.0 1555
• AutoFact: vacuolar protein / peptidase dimerization domain-containing protein [Arabidopsis thaliana] dbj|BAE98701.1| 24 kDa vacuolar protein - like [Arabidopsis thaliana] gb|AED92872.1| vacuolar protein / peptidase dimerization domain-containing protein [Arabidopsi 0.0
• FL-Next: tr=ATP binding protein, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: endoplasmic reticulum metallopeptidase 0.0
N-terminus
sp_v2.0_unigene26729 SustainPine v2.0 901
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
Putative C-terminus
sp_v2.0_unigene27095 SustainPine v2.0 1443
• AutoFact: pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pre-mrna-splicing factor atp-dependent rna helicase prp16-like 0.0
Complete
sp_v2.0_unigene28011 SustainPine v2.0 2251
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative Complete
sp_v2.0_unigene29317 SustainPine v2.0 715
• AutoFact: ATP-dependant RNA helicase [Plasmodium vivax SaI-1] gb|EDL44982.1| ATP-dependant RNA helicase, putative [Plasmodium vivax] 2.8026e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: atp-dependent rna helicase dhx8 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain