Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type

Term: IPR006649  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene17522 SustainPine v2.0 588
• AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 5.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein g 0.0
Complete
sp_v2.0_unigene17659 SustainPine v2.0 900
• AutoFact: U6 snRNA-associated Sm-like protein [Arabidopsis thaliana] gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095 and contains a conserved Sm protein PF|01423 motif. EST gb|AI998441 comes from this gene [Arabidopsis th 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u6 snrna-associated sm-like protein lsm3 0.0
Complete
sp_v2.0_unigene18231 SustainPine v2.0 1250
• AutoFact: Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] gb|AAD15345.1| small nuclear riboprotein Sm-D1 [Arabidopsis thaliana] emb|CAB77769.1| small nuclear riboprotein Sm-D1-like protein [Arabidopsis thaliana] gb|AAM61281.1| small nuclear ri 4.2039e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein sm d1 0.0
Complete
sp_v2.0_unigene18564 SustainPine v2.0 1248
• AutoFact: U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana] ref|NP_849931.1| U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana] gb|AAD24820.1| putative snRNP splicing factor [Arabidopsis thaliana] gb|AAO23652.1| At2g03870 [Arabidopsis tha 3.00018e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u6 snrna-associated sm-like protein lsm7-like 0.0
Complete
sp_v2.0_unigene18565 SustainPine v2.0 952
• AutoFact: Putative snRNP core protein SMX5d n=1 Tax=Oryza sativa Japonica Group RepID=Q7F193_ORYSJ 1.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: snrnp core sm protein sm-x5-like protein 0.0
Complete
sp_v2.0_unigene20030 SustainPine v2.0 1570
• AutoFact: U6 snRNA-associated Sm-like protein LSm1 [Arabidopsis thaliana] ref|NP_850580.1| U6 snRNA-associated Sm-like protein LSm1 [Arabidopsis thaliana] gb|AAM61336.1| Sm protein, putative [Arabidopsis thaliana] gb|AAO22620.1| putative Sm protein [Arabidopsis tha 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u6 snrna-associated sm-like protein lsm1 0.0
Complete
sp_v2.0_unigene20780 SustainPine v2.0 1297
• AutoFact: [O] COG0464 ATPases of the AAA+ class 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene21389 SustainPine v2.0 1133
• AutoFact: putative Sm protein F [Oryza sativa Japonica Group] dbj|BAG86709.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE57059.1| hypothetical protein OsJ_06869 [Oryza sativa Japonica Group] 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene21637 SustainPine v2.0 1014
• AutoFact: Sm-like protein [Arabidopsis thaliana] 6.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene21717 SustainPine v2.0 999
• AutoFact: small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: small nuclear ribonucleoprotein associated protein b 8.18162e-41
Putative Complete
sp_v2.0_unigene22576 SustainPine v2.0 2024
• AutoFact: BTB-POZ and math domain-containing protein [Arabidopsis thaliana] sp|Q8L765.1|BPM1_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 1; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 1; Short=AtBPM1 gb|AAM97116.1| putative protein [Arabidopsis 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene23141 SustainPine v2.0 1283
• AutoFact: Glycine rich protein-like n=4 Tax=Arabidopsis RepID=Q8LAC6_ARATH 9.99967e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u6 snrna-associated sm-like protein lsm4 0.0
Complete
sp_v2.0_unigene23502 SustainPine v2.0 1002
• AutoFact: small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] emb|CAB83134.1| small nuclear ribonucleoprot 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein d2 0.0
Complete
sp_v2.0_unigene24813 SustainPine v2.0 1072
• AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein g 1.4013e-45
Complete
sp_v2.0_unigene25381 SustainPine v2.0 1051
• AutoFact: putative Sm protein F [Oryza sativa Japonica Group] dbj|BAG86709.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE57059.1| hypothetical protein OsJ_06869 [Oryza sativa Japonica Group] 2.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene26070 SustainPine v2.0 680
• AutoFact: Protein MSP1, putative n=1 Tax=Ricinus communis RepID=B9T1I4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: p-loop containing nucleoside triphosphate hydrolase domain-containing protein 0.0
Internal
sp_v2.0_unigene27065 SustainPine v2.0 2473
• AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: atp binding 0.0
Complete
sp_v2.0_unigene27193 SustainPine v2.0 1827
• AutoFact: ATP binding protein, putative (EC:3.6.4.3) 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: atp binding 0.0
Putative Complete
sp_v2.0_unigene28258 SustainPine v2.0 4002
• AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v2.0_unigene33282 SustainPine v2.0 871
• AutoFact: transitional endoplasmic reticulum ATPase-like [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: p-loop containing ntpase domain-containing protein 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain