Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site

Term: IPR002464  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene31124 SustainPine v2.0 557
AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-splicing factor atp-dependent rna helicase 0.0
Putative C-terminus
sp_v2.0_unigene33789 SustainPine v2.0 530
AutoFact: RecName: Full=Protein farnesyltransferase subunit beta; Short=FTase-beta; AltName: Full=CAAX farnesyltransferase subunit beta; AltName: Full=Ras proteins prenyltransferase subunit beta gb|AAA33649.1| farnesyl-protein transferase beta-subunit [Pisum sativu 9.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein farnesyltransferase subunit beta-like isoform 1 0.0
C-terminus
sp_v2.0_unigene33834 SustainPine v2.0 479
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
N-terminus
sp_v2.0_unigene36002 SustainPine v2.0 722
AutoFact: Helicase domain-containing protein n=4 Tax=Arabidopsis RepID=D7MLJ1_ARALL 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: helicase domain-containing protein 0.0
Internal
sp_v2.0_unigene36189 SustainPine v2.0 629
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_56.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKY5_VITVI 3.0e-31
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 1.22473e-38
N-terminus
sp_v2.0_unigene36663 SustainPine v2.0 501
AutoFact: pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pre-mrna-splicing factor atp-dependent rna helicase prp16-like 0.0
Internal
sp_v2.0_unigene36788 SustainPine v2.0 775
AutoFact: putative DNA helicase [Arabidopsis thaliana] 5.0e-37
FL-Next: sp=ATP-dependent DNA helicase Q-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna helicase 1.4013e-45
C-terminus
sp_v2.0_unigene36813 SustainPine v2.0 563
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTY5_RICCO 0.0
FL-Next: sp=Probable chromatin-remodeling complex ATPase chain; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
sp_v2.0_unigene36929 SustainPine v2.0 642
AutoFact: Os07g0681600 protein n=3 Tax=Oryza sativa RepID=Q7XHW1_ORYSJ 0.0
FL-Next: sp=ATP-dependent DNA helicase Q-like SIM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atp-dependent dna helicase 0.0
Internal
sp_v2.0_unigene37063 SustainPine v2.0 314
AutoFact: RecQ-like helicase 2 [Oryza sativa Japonica Group] 9.80909e-45
FL-Next: Isoform 2 of ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana GN=RECQL2 0.0
Blast2go: atp-dependent dna family expressed 0.0
Internal
sp_v2.0_unigene37584 SustainPine v2.0 455
AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9SXG0_RICCO 2.0e-22
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna helicase 1.88456e-25
Internal
sp_v2.0_unigene37666 SustainPine v2.0 430
AutoFact: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase n=2 Tax=Arabidopsis thaliana RepID=DHX8_ARATH 4.99983e-42
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v2.0_unigene37675 SustainPine v2.0 741
AutoFact: DNA/RNA helicase protein RAD5 [Arabidopsis thaliana] sp|Q9FNI6.1|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Short=SMARCA3-like protein 2 dbj|BAB11681.1| DNA repa 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swi snf-related matrix-associated actin-dependent regulator of chromatin subfamily a member 3-like 2-like 0.0
Internal
sp_v2.0_unigene37789 SustainPine v2.0 608
AutoFact: regulator of telomere elongation helicase 1 [Arabidopsis thaliana] gb|AEE36333.1| regulator of telomere elongation helicase 1 [Arabidopsis thaliana] 5.0e-28
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: regulator of telomere elongation helicase 1 8.40779e-45
Putative C-terminus
sp_v2.0_unigene37797 SustainPine v2.0 430
AutoFact: DEA(D/H)-box RNA helicase family protein n=4 Tax=Arabidopsis RepID=F4HYJ6_ARATH 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable atp-dependent rna helicase dhx36-like 0.0
Internal
sp_v2.0_unigene37828 SustainPine v2.0 727
AutoFact: Bet_v_1 domain containing protein 0.0001
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: abscisic acid receptor pyl5-like 0.0
N-terminus
sp_v2.0_unigene38083 SustainPine v2.0 491
AutoFact: Transcription-coupled repair protein CSB/RAD26 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SCT4_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna repair and recombination protein 0.0
Internal
sp_v2.0_unigene38362 SustainPine v2.0 374
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 5.0e-40
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
Internal
sp_v2.0_unigene38471 SustainPine v2.0 857
AutoFact: DNA helicase hus2, putative n=1 Tax=Ricinus communis RepID=B9RFH2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna helicase 0.0
Putative N-terminus
sp_v2.0_unigene38500 SustainPine v2.0 520
AutoFact: DNA/RNA helicase protein RAD5 [Arabidopsis thaliana] sp|Q9FNI6.1|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Short=SMARCA3-like protein 2 dbj|BAB11681.1| DNA repa 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: swi snf-related matrix-associated actin-dependent regulator of chromatin subfamily a member 3-like 2-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain