Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA helicase, DEAD-box type, Q motif

Term: IPR014014  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene4368 SustainPine v2.0 394
AutoFact: DEAD-box ATP-dependent RNA helicase 50 [Arabidopsis thaliana] sp|Q8GUG7.2|RH50_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 50 gb|AAF27002.1|AC016827_13 putative DEAD/DEAH box helicase [Arabidopsis thaliana] gb|AAK82522.1| AT3g06980/F17A9_13 [A 3.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 50-like 0.0
Internal
sp_v2.0_unigene4834 SustainPine v2.0 2676
AutoFact: DEAD-box ATP-dependent RNA helicase 39 n=3 Tax=Oryza sativa RepID=RH39_ORYSJ 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 39; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dead-box atp-dependent rna helicase 39 0.0
Complete
sp_v2.0_unigene5375 SustainPine v2.0 855
AutoFact: DEAD-box ATP-dependent RNA helicase 17 [Arabidopsis thaliana] sp|Q7XJN0.1|RH17_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 17 gb|AEC09865.1| DEAD-box ATP-dependent RNA helicase 17 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: low quality protein: dead-box atp-dependent rna helicase 17-like 0.0
Internal
sp_v2.0_unigene5764 SustainPine v2.0 413
AutoFact: DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana] sp|O22907.2|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24 gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana] gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidop 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 24 0.0
Internal
sp_v2.0_unigene8252 SustainPine v2.0 1704
AutoFact: DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana] sp|Q9SA27.1|RH36_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 36 gb|AAD34681.1|AC006341_9 Similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila melanogaster and is a member 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 36-like 0.0
Putative Complete
sp_v2.0_unigene8740 SustainPine v2.0 988
AutoFact: putative chloroplast RNA helicase VDL' isoform 1 [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase chloroplastic-like 0.0
C-terminus
sp_v2.0_unigene8855 SustainPine v2.0 1036
AutoFact: probable ATP-dependent RNA helicase DDX59 [Danio rerio] gb|AAI34851.1| LOC562123 protein [Danio rerio] 7.0e-13
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 41; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dead-box atp-dependent rna helicase 0.0
N-terminus
sp_v2.0_unigene9044 SustainPine v2.0 2637
AutoFact: DEAD-box ATP-dependent RNA helicase 6 n=6 Tax=BEP clade RepID=RH6_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 8-like 0.0
Complete
sp_v2.0_unigene9173 SustainPine v2.0 2059
AutoFact: DEAD-box ATP-dependent RNA helicase 2 n=6 Tax=BEP clade RepID=RH2_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nicotiana eukaryotic translation initiation factor 4a 0.0
Complete
sp_v2.0_unigene10176 SustainPine v2.0 876
AutoFact: PRP38_assoc multi-domain protein 3.0e-09
Putative coding
sp_v2.0_unigene10324 SustainPine v2.0 1044
AutoFact: DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana] sp|Q9SA27.1|RH36_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 36 gb|AAD34681.1|AC006341_9 Similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila melanogaster and is a member 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 36-like 0.0
Putative N-terminus
sp_v2.0_unigene10699 SustainPine v2.0 1853
AutoFact: DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana] sp|P93008.1|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21 gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase [Arabidopsis thaliana] gb|AAL38370.1| put 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 0.0
Complete
sp_v2.0_unigene11678 SustainPine v2.0 461
AutoFact: FAP multi-domain protein 2.0e-18
Coding
sp_v2.0_unigene12556 SustainPine v2.0 302
AutoFact: DEAD-box ATP-dependent RNA helicase 47 [Arabidopsis thaliana] sp|Q8W4E1.2|RH47_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 47, mitochondrial; AltName: Full=Protein EMBRYO DEFECTIVE 1586; AltName: Full=Protein INCREASED SIZE EXCLUSION LIMIT 1; 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent rna helicase 1.37327e-43
Internal
sp_v2.0_unigene13262 SustainPine v2.0 2011
AutoFact: DEAD-box ATP-dependent RNA helicase 2 n=6 Tax=BEP clade RepID=RH2_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nicotiana eukaryotic translation initiation factor 4a 0.0
Complete
sp_v2.0_unigene13589 SustainPine v2.0 1833
AutoFact: DEAD-box ATP-dependent RNA helicase 57 [Arabidopsis thaliana] sp|Q84TG1.1|RH57_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 57 gb|AAO64768.1| At3g09720 [Arabidopsis thaliana] dbj|BAE99340.1| RNA helicase like protein [Arabidopsis thaliana] gb|A 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 57; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dead-box atp-dependent rna helicase 57 0.0
Complete
sp_v2.0_unigene14986 SustainPine v2.0 816
AutoFact: putative DEAD-box protein abstrakt [Trifolium pratense] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box protein abstrakt 0.0
Internal
sp_v2.0_unigene16298 SustainPine v2.0 2001
AutoFact: Eukaryotic initiation factor 4A-1 n=67 Tax=Magnoliophyta RepID=IF4A1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic initiation factor 4a 0.0
Complete
sp_v2.0_unigene17027 SustainPine v2.0 1336
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RGR4_RICCO 7.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead box atp-dependent rna 7.41694e-36
C-terminus
sp_v2.0_unigene17155 SustainPine v2.0 2677
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 53; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dead-box atp-dependent rna helicase 53-like 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain