Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Zinc finger, LSD1-type

Term: IPR005735  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene2644 SustainPine v2.0 3139
AutoFact: Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase non-catalytic subunit jp650 0.0
Putative Complete
sp_v2.0_unigene9875 SustainPine v2.0 1602
AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: metacaspase 1 0.0
Complete
sp_v2.0_unigene13834 SustainPine v2.0 860
AutoFact: Metacaspase-1 n=1 Tax=Arabidopsis thaliana RepID=MCA1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: metacaspase 1 0.0
N-terminus
sp_v2.0_unigene15091 SustainPine v2.0 568
AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: metacaspase 9 2.51004e-23
C-terminus
sp_v2.0_unigene16045 SustainPine v2.0 1770
AutoFact: zinc finger protein LSD1 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lsd1-like protein 0.0
Complete
sp_v2.0_unigene24950 SustainPine v2.0 1600
AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: metacaspase 1 0.0
Complete
sp_v2.0_unigene27146 SustainPine v2.0 1885
AutoFact: WS02926.CR_L20 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02926_L20 3', mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: strawberry notch-like protein 0.0
C-terminus
sp_v2.0_unigene36775 SustainPine v2.0 491
AutoFact: Caspase, putative n=1 Tax=Ricinus communis RepID=B9SKF8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene39156 SustainPine v2.0 401
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein strawberry notch-like 0.0
Internal
sp_v2.0_unigene41665 SustainPine v2.0 575
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: strawberry notch-like protein 0.0
Internal
sp_v2.0_unigene42935 SustainPine v2.0 438
AutoFact: PHD domain containing protein 3.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: strawberry notch-like protein 5.7229e-42
Putative N-terminus
sp_v2.0_unigene59583 SustainPine v2.0 418
AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 2.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100193173 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain